View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_19 (Length: 418)
Name: NF19009_low_19
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 21344435 - 21344843
Alignment:
| Q |
1 |
tgtcatgttaggttattgttattttttctctcttcatattatacaatgattcagtagttttaggtactaaattaatcggaataatatgctgtttccatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21344435 |
tgtcatgttaggttattgttatttttttt-tcttcatattagacaatgattcagtagttttaggtactaaattaatcggaataatatgctgttttcatct |
21344533 |
T |
|
| Q |
101 |
caaatgcggtttgtgtactttgtagttgacataactgttggattattgccttaaaatgggttttaagtgggaggcatccaaactcaaattttaagatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21344534 |
caaatgcggtttgtgtactttgtagttgacataactattggattattgccttaaaatgtgttttaagtgggaggcatccaaactcaaattttaagatggt |
21344633 |
T |
|
| Q |
201 |
attagagcttatcctaattccgttgagcca-gcgttgtcgagtcgcttaggtcacgttccaaatgtctagtcataaagcataactagattagtgtttctt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21344634 |
attagagcttatcctaattccgttgagccacccgttgtcgagtcgcttaggtcacgttccaaatgtcttgtcataaagcataactagattagtgtttctt |
21344733 |
T |
|
| Q |
300 |
caataatgtcagcttcactagtcttagaatagtggattagaaactaaatctcctacagtgaaacttaatcattggagttcttaaacccacttgggttggc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21344734 |
caataatgtcagcttcactagtcttagaatagtggattagaaactaaatctcctacggtgaaacttaatcattggagttcttaaacccacttgggttggc |
21344833 |
T |
|
| Q |
400 |
ctgatgatgt |
409 |
Q |
| |
|
|||||||||| |
|
|
| T |
21344834 |
ctgatgatgt |
21344843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 9155768 - 9155723
Alignment:
| Q |
185 |
caaattttaagatggtattagagcttatcctaattccgttgagcca |
230 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||| |||| |
|
|
| T |
9155768 |
caaattttaagatggtattacaggttatcctaaatccgttgggcca |
9155723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University