View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_2 (Length: 740)
Name: NF19009_low_2
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_2 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Original strand, 5399829 - 5400558
Alignment:
| Q |
1 |
cgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgtctgacatcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399829 |
cgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgtctgacatcaat |
5399928 |
T |
|
| Q |
101 |
gataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatcgt----atatatgtatatgatactgagacacatataatccgaagagtacgt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
5399929 |
aataatttaaaaaatgacataattcaatgtaattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatctgaagagtacgt |
5400028 |
T |
|
| Q |
197 |
gtgtttattaggtatatggacatgtctattaatgatcaatcaatacagtagtactactagaactcaattactacgacaataaagaaagtgtatgggttat |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5400029 |
gtgtttattaggtatatggacatgtcgattaatgatcaatcaatacagtagtactactagaactcaattacaacgacaataaagaaagtgtatgggttat |
5400128 |
T |
|
| Q |
297 |
tgcacgtattttgatgggattaaaggaatgttacactttgttgggattttaaaagttgaactttaaaacactttttcagatgaaacagagcgttactcag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400129 |
tgcacgtattttgatgggattaaaggaatgttacactttgttgggattttaaaagttgaactttaaaacactttttcagatgaaacagagcgttactcag |
5400228 |
T |
|
| Q |
397 |
agtgaaaaggctttgcaaaatttacatgtggtcattggacaattactagtgtgttgtttgtttctttcatgttctaaaaaagatatgaaaatgtttttgg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5400229 |
agtgaaaaggctttgcaaaatttacatgtggtcattggacaattactagtgtgttgtttgtttctttcattttctaaaaaagatatgaaaatgtttttgg |
5400328 |
T |
|
| Q |
497 |
atttttatgattttcattatccatgccatcatgattgacatacaatgtaagtaaagtttattgtcctctcataatcgtggcagttttgatcgcataattg |
596 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5400329 |
atttttatgattttcattatccatgccatcatgattgatataaaatgtaagtaaaatttattgtcctctcataatcgtggcagttttgatcgcataattg |
5400428 |
T |
|
| Q |
597 |
ctactgatgagtaattctctaaaacatggaatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggat |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400429 |
ctactgatgagtaattctctaaaacatggaatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggat |
5400528 |
T |
|
| Q |
697 |
tttgggtaaaaacaattttgatatctaaat |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5400529 |
tttgggtaaaaacaattttgatatctaaat |
5400558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
| Q |
109 |
aaaaaatgacataattcaatgtaactatatgtgt |
142 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
38749604 |
aaaaaatgacataattcaatgtaattatatgtgt |
38749571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 101015 - 101052
Alignment:
| Q |
106 |
tttaaaaaatgacataattcaatgtaactatatgtgtc |
143 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
101015 |
tttaaaaaatgacataattcaatgtaattatatgtgtc |
101052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
| Q |
109 |
aaaaaatgacataattcaatgtaactatatgtgt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
17168912 |
aaaaaatgacataattcaatgtaactatatgtgt |
17168945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
| Q |
91 |
tgacatcaatgataatttaaaaaatgacataattcaatgtaa |
132 |
Q |
| |
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||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
13815098 |
tgacaccaataataatttaaaaaatgacataattgaatgtaa |
13815057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
| Q |
111 |
aaaatgacataattcaatgtaactatatgtgtcggtatcgt |
151 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |
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| T |
19930980 |
aaaatgacataattcaatgtaattatatgtgtcgatatcgt |
19930940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
| Q |
109 |
aaaaaatgacataattcaatgtaactatatgtgtcgg |
145 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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| T |
30606105 |
aaaaaatgacataattcaatgtaaccatatgtgtcgg |
30606069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
| Q |
102 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt |
146 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
32915654 |
ataatttaaaaaatcacataattcaatgtaattatatgtttcggt |
32915610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
| Q |
102 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc |
149 |
Q |
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||||||| | ||||||||||||||| |||||||||| ||||||||||| |
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| T |
14692470 |
ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc |
14692517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
| Q |
92 |
gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg |
144 |
Q |
| |
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|||| |||| ||||||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
41319369 |
gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg |
41319316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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