View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_20 (Length: 413)
Name: NF19009_low_20
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_20 |
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| [»] chr6 (9 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 6496402 - 6496799
Alignment:
| Q |
16 |
atgcatttgcagcttgacttgtgctcttatggtttcttccgtctttatactgaattaaccctggactatgattgtggccgtgataaagatcataatatct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6496402 |
atgcatttgcagcttgacttgtgctcttatggtttcttccatctttatactgaattaaccctggactatgattgtggccatgataaagatcataatatct |
6496501 |
T |
|
| Q |
116 |
taaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496502 |
taaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtca |
6496601 |
T |
|
| Q |
216 |
atcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacc |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6496602 |
atcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcattagaatcaacagacc |
6496701 |
T |
|
| Q |
316 |
cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496702 |
cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaac |
6496799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 6462270 - 6461873
Alignment:
| Q |
16 |
atgcatttgcagcttgacttgtgctcttatggtttcttccgtctttatactgaattaaccctggactatgattgtggccgtgataaagatcataatatct |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| || || |||||| ||| |||||||| ||| |
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| T |
6462270 |
atgcatttgcagcttggcttgtgctcttatggtttcttccatctttatgttgaattaaccctggagcataatggtggccttgaacgtaatcataatctct |
6462171 |
T |
|
| Q |
116 |
taaacgtgtgtcatcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtca |
215 |
Q |
| |
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| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6462170 |
ttgacgtgggtcatcggagtctggtcctgagtccaagttcataaaatctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtca |
6462071 |
T |
|
| Q |
216 |
atcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacc |
315 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||| |||||||||||||| | ||||| |
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|
| T |
6462070 |
atctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacc |
6461971 |
T |
|
| Q |
316 |
cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaac |
413 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6461970 |
cttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaac |
6461873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 213 - 413
Target Start/End: Original strand, 6465259 - 6465459
Alignment:
| Q |
213 |
tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacag |
312 |
Q |
| |
|
|||||||| | ||| |||||||||||||| |||||||||||||| |||| | |||||||||||| | |||||| || ||||||| || |||| || |
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| T |
6465259 |
tcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaatccaaaatcagcaccagtatcattag |
6465358 |
T |
|
| Q |
313 |
acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa |
412 |
Q |
| |
|
|||||||| |||||||||| || |||||||| |||| | ||||||||||| ||||| ||||||||||| | |||||||||||| ||||| |||||||| |
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| T |
6465359 |
acccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttcaaaaa |
6465458 |
T |
|
| Q |
413 |
c |
413 |
Q |
| |
|
| |
|
|
| T |
6465459 |
c |
6465459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 394
Target Start/End: Complemental strand, 6473360 - 6473114
Alignment:
| Q |
148 |
tcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaa |
247 |
Q |
| |
|
||||| |||||||||||| ||| |||| |||||| || ||||||||||| |||||| | | |||||||||| ||| || ||||||||||| ||||| |
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| T |
6473360 |
tcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaa |
6473261 |
T |
|
| Q |
248 |
gtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaatgccaccccatttatca |
347 |
Q |
| |
|
||| ||||| |||| | |||||||||||| |||||||| ||| ||||||| | |||| ||| |||||| |||| | ||| || |||||||| | | |
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| T |
6473260 |
gtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccatttttta |
6473161 |
T |
|
| Q |
348 |
tcttgtagaaatccattcccatttaaagttccatctaaccaaggctc |
394 |
Q |
| |
|
|| | ||||||||||| ||||| || |||||||| | ||||||||| |
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| T |
6473160 |
tcatagagaaatccatttccattaaatgttccatcgagccaaggctc |
6473114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 412
Target Start/End: Original strand, 6505343 - 6505605
Alignment:
| Q |
150 |
aagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaagt |
249 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || |||||||||| |||||||| | || ||||| ||| || || ||| | |||||||| | |
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|
| T |
6505343 |
aagttcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaat |
6505442 |
T |
|
| Q |
250 |
atcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaatgccaccccatttatcatc |
349 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||| ||||| | | |||| |||||||||| |||| || || |||||||| | ||| |
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|
| T |
6505443 |
atcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccaccaccatcattagacccttgttgagtaataagtcctccccattttttatc |
6505542 |
T |
|
| Q |
350 |
ttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa |
412 |
Q |
| |
|
| |||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
6505543 |
atatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaa |
6505605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 410
Target Start/End: Original strand, 6526298 - 6526495
Alignment:
| Q |
213 |
tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacag |
312 |
Q |
| |
|
|||||||||| ||| || ||||||||||| |||||||||||||| |||| | |||||||||||| | |||||| || ||||||| | || || |
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|
| T |
6526298 |
tcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcaccggcatttgtag |
6526397 |
T |
|
| Q |
313 |
acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaa |
410 |
Q |
| |
|
| || ||| |||| ||||| | |||||||| | ||| | ||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
6526398 |
aaccatgtttggttacaatatctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaa |
6526495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 409
Target Start/End: Complemental strand, 13035976 - 13035798
Alignment:
| Q |
231 |
gcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcgttagaatcaacagacccttgtatggtaacaa |
330 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| | ||| |||||||| ||||| || ||| ||||||| | |||| ||| |||||| | || | || |
|
|
| T |
13035976 |
gcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcaccggtatcagtagaaccttgtttcgttataa |
13035877 |
T |
|
| Q |
331 |
tgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaa |
409 |
Q |
| |
|
| || |||||||| | ||| | ||||||||||| ||||| ||||||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
13035876 |
tacctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaa |
13035798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 6516422 - 6516295
Alignment:
| Q |
150 |
aagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaagaacagcaattccataaagaaagt |
249 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |||||| ||| ||||||||| | ||||||||| ||| || ||||||||||||||||| | |
|
|
| T |
6516422 |
aagttcataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaat |
6516323 |
T |
|
| Q |
250 |
atcctaagtgatcagcatgatcattata |
277 |
Q |
| |
|
||||||| |||| | |||||||||||| |
|
|
| T |
6516322 |
atcctaattgataatgatgatcattata |
6516295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 6457299 - 6457372
Alignment:
| Q |
213 |
tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaa |
286 |
Q |
| |
|
|||||||| | ||| || ||||||||||| |||||||||||||| |||| | |||||||||||| || ||||| |
|
|
| T |
6457299 |
tcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaataccgaa |
6457372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 3754080 - 3754004
Alignment:
| Q |
213 |
tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaacc |
289 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| || ||||| |||| | |||||||||||| ||||| ||||| |
|
|
| T |
3754080 |
tcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaaacc |
3754004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 9665454 - 9665357
Alignment:
| Q |
316 |
cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaac |
413 |
Q |
| |
|
||||| |||| ||||| || |||||||| | ||| | ||||||||||| | || ||||||||||| ||||| || ||||| ||||||||||||||| |
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|
| T |
9665454 |
cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaac |
9665357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 13536478 - 13536381
Alignment:
| Q |
316 |
cttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaac |
413 |
Q |
| |
|
||||| |||| ||||| || |||||||| | ||| | ||||||||||| | || ||||||||||| ||||| || ||||| ||||||||||||||| |
|
|
| T |
13536478 |
cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaac |
13536381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 35244342 - 35244309
Alignment:
| Q |
148 |
tcaagttcataaaatctttcataagtgaataggc |
181 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
35244342 |
tcaagttcataaaatctttcatgagtgaataggc |
35244309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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