View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_23 (Length: 392)
Name: NF19009_low_23
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 27886345 - 27886717
Alignment:
| Q |
19 |
ctcaccccccatgataaaccgccaacgtcacttctcgaaaagggcaagatttaccaaccttagatctctgatatccggttt-----cactttt-aggttt |
112 |
Q |
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| T |
27886345 |
ctcaccccccatgataaaccgccaacgtcacttctccaaaagggcaagatttaccaaccttagatctctgatatccgatcttcttccactttttatgttt |
27886444 |
T |
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| Q |
113 |
ataaacatttgaccgtcggattcaagaaatctttctagtccctttagaccaaccccataagaaacgacgttgaatctttacaatccatcttaaaacacaa |
212 |
Q |
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| T |
27886445 |
ataaacatttgaccgtcggatccaagaaatctttgtagtccctttagaccaaccccgtaagaaatgacgttgaatccttacaatccatcttaaaacacaa |
27886544 |
T |
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| Q |
213 |
tataataatttattattacgata-nnnnnnnngtagtttgttactannnnnnnaaatgttacggaatttaagtatatgttttgtatagtgttgaacatat |
311 |
Q |
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| T |
27886545 |
tataataatttattattaccatatttttttttgtagtttgttaatattttttt-aatgttacggaatttatgtatatgttttgtatagggttgaacatat |
27886643 |
T |
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| Q |
312 |
tttctaaagtataaatacgggaatgatatagatttacaataaaattttagtgaataaaaattaacttaagaata |
385 |
Q |
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||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27886644 |
tttctaaagtataaatacgagaatgagataaatttacaataaaattttagtgaataaaaattaatttaagaata |
27886717 |
T |
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