View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_24 (Length: 389)
Name: NF19009_low_24
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_24 |
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| [»] scaffold1121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 50 - 381
Target Start/End: Original strand, 6485130 - 6485460
Alignment:
| Q |
50 |
atggaagagttttcttatcctatccagttactggttagtttgtaatcaaagcaagtcctattaaaattcaatttaaccctaaatatatagttggaccttg |
149 |
Q |
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| T |
6485130 |
atggaagagttttcttatcctatccagttactggttagtttgtaatcaaagcaagtcctattaaaattcaatttaaccctaaatatatagttggaccttg |
6485229 |
T |
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| Q |
150 |
tttttagggttaaattatcgtatcctttaaatcaccgtaagtatatttagggttaaattatcgtatccattaaatcaccgtaagtatacagttggatcac |
249 |
Q |
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| T |
6485230 |
tttttagggttaaattatcgtatcctttaaatcaccgtaagtatatttagggttaaattattgtatccattaaatcaccgtaagtatacagttggatcac |
6485329 |
T |
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| Q |
250 |
ctttaaagcaagcaaatgtgtttgtacataaggaaaagttattcccacttgattttgactaaaaacccaatcttcacaattttaaactaaagatagaagt |
349 |
Q |
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| T |
6485330 |
ctttaaagcaagcaaatgtgtttgtacataaggaaaagttattcccacttgattttgactaaaaacccaatcttcacaattttaaactaaagat-gaagt |
6485428 |
T |
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| Q |
350 |
tgtttttagttataggtttgtgttttgatgat |
381 |
Q |
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| T |
6485429 |
tgtttttagttataggtttgtgttttgatgat |
6485460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 383
Target Start/End: Complemental strand, 21592654 - 21592624
Alignment:
| Q |
353 |
ttttagttataggtttgtgttttgatgatgt |
383 |
Q |
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| T |
21592654 |
ttttagttataggtttgtgttttgatgatgt |
21592624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 22739939 - 22739977
Alignment:
| Q |
345 |
gaagttgtttttagttataggtttgtgttttgatgatgt |
383 |
Q |
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| T |
22739939 |
gaagttgtttttagttataggtttgtgttttgatgatgt |
22739977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 42369965 - 42369934
Alignment:
| Q |
353 |
ttttagttataggtttgtgttttgatgatgtc |
384 |
Q |
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| T |
42369965 |
ttttagttataggtttgtgttttgatgatgtc |
42369934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1121
Description:
Target: scaffold1121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 379 - 409
Alignment:
| Q |
354 |
tttagttataggtttgtgttttgatgatgtc |
384 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
379 |
tttagttataggtttgtgttttgatgatgtc |
409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 10491357 - 10491387
Alignment:
| Q |
354 |
tttagttataggtttgtgttttgatgatgtc |
384 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10491357 |
tttagttataggtttgtgttttgatgatgtc |
10491387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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