View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_26 (Length: 382)
Name: NF19009_low_26
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 11844429 - 11844788
Alignment:
| Q |
18 |
ctttggccatgaatttccctctagctgatacttttattaagtaaaattgaatgcaaaacttaaaatatgtctaaaaaacacatactctttctatttgata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11844429 |
ctttggccatgaatttccctctagctgatacttttattaggtaaaattgaatgcaaaacttaaaatatgtctaaaaaacacatactctttctatttgata |
11844528 |
T |
|
| Q |
118 |
aaacacgttaacgcctcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttgatatgctgacgtgcgggtctaaacccgc |
217 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
11844529 |
aaacacggtaaccactcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttgatatgcagacgtgcgggtctaaacccac |
11844628 |
T |
|
| Q |
218 |
agttctccacttctccgtacttagtgtgagttttacaaataacagttctcaattacactcaccagtcaccactatgttttcataatctcctaatttattg |
317 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11844629 |
agttctccacttctccgtacttagggtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaatttactg |
11844728 |
T |
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| Q |
318 |
tgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggcctatg |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
11844729 |
tgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatggttggtctatg |
11844788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 11849158 - 11849517
Alignment:
| Q |
18 |
ctttggccatgaatttccctctagctgatacttttattaagtaaaattgaatgcaaaacttaaaatatgtctaaaaaacacatactctttctatttgata |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849158 |
ctttggccatgaatttccatctagctgatacttttattaggtaaaattgaatgcaaaatttaaaatatgtctaaaaaacacatactctttctatttgata |
11849257 |
T |
|
| Q |
118 |
aaacacgttaacgcctcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttgatatgctgacgtgcgggtctaaacccgc |
217 |
Q |
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|
|||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
11849258 |
aaacacgttaacacctcatgattcgcatcccataagtaccactcatatggtaaaatgttattgggatatttgatatgcagacgtgcgggtctaaacccac |
11849357 |
T |
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| Q |
218 |
agttctccacttctccgtacttagtgtgagttttacaaataacagttctcaattacactcaccagtcaccactatgttttcataatctcctaatttattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849358 |
agttctccacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaatttattg |
11849457 |
T |
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| Q |
318 |
tgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggcctatg |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11849458 |
tgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtctatg |
11849517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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