View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_30 (Length: 372)
Name: NF19009_low_30
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 43 - 359
Target Start/End: Original strand, 10340529 - 10340846
Alignment:
| Q |
43 |
aaaactatggtgctttaaaa-aagcctaaaagcattaattagcataccattcaattaaaagcgagccaatcaagtaacattcattatgcaatgattatat |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10340529 |
aaaactatggtgctttaaaaaaagcctaaaagcattaattagcataccattcaattaaaagcgagccaatcaagtaacattcattatgcaatgattatat |
10340628 |
T |
|
| Q |
142 |
caagataacggcgtgaattgaaatcaaatcaaataattaagaagattaagattagttaatgcaagtaatgtagagttagactaaaataattgatatttga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10340629 |
caagataacggcgtgaattgaaatcaaatcaaataattaagaagattaagattagttaatgcaagtaatgtagagttagactaaaataattgatatttga |
10340728 |
T |
|
| Q |
242 |
aagtgagtggatgacatcatatttcatctnnnnnnnnnngaaatgacacctaaaagatccgtgtcatactctacttcagcatagtgcattatccactcta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10340729 |
aagtgagtggatgacatcatatttcatctaaaaaaataagaaatgacacctaaaagatccgtgtcatactctacttcagcatagtgcattatccactcta |
10340828 |
T |
|
| Q |
342 |
attataatcactttgatg |
359 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10340829 |
attataatcactttgatg |
10340846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 10340474 - 10340504
Alignment:
| Q |
18 |
cactagtggcccataacaaggtgtgaaaact |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10340474 |
cactagtggcccataacaaggtgtgaaaact |
10340504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University