View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_31 (Length: 372)
Name: NF19009_low_31
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 10341171 - 10340902
Alignment:
| Q |
29 |
gttgcttatatgactaaatacctaacatctaatgaaaatgacaaatgtcaagggtgatataattatgttcctttatatatggaatataactcttaaagtg |
128 |
Q |
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| T |
10341171 |
gttgcttatatgactaaatacctaacatctaatgaaaatgacaaatgtcaagggtgatataattatgttcctttatatatggaatataactcttaaagtg |
10341072 |
T |
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| Q |
129 |
acttttatcatataatcatcatactttgcttcttcacttcttcatttctcacatatagttaaaccataaatgacatagtatttacttttctaaacatagc |
228 |
Q |
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| T |
10341071 |
acttttatcatataatcatcatactttgcttcttcacttcttcatttctcacacatagttaaaccataaatgacatagtatttacttttctaaacatagc |
10340972 |
T |
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| Q |
229 |
taataattgattgacaggtccatttctagatttcatcccttgaactctacctgttgaaaaagttactgtg |
298 |
Q |
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| T |
10340971 |
taataattgattgacaggtccatttctagatctcatcccttgaactctacctgttgaaaaagttactgtg |
10340902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 10340882 - 10340837
Alignment:
| Q |
310 |
gcataagcatgccttgtagtcctttcttaagtccaacatcatagtg |
355 |
Q |
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| T |
10340882 |
gcataagcatgcatagtagtcctttcttaagtccaacatcaaagtg |
10340837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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