View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_35 (Length: 358)
Name: NF19009_low_35
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 5135171 - 5135004
Alignment:
| Q |
10 |
gcacagaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctgg |
109 |
Q |
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| T |
5135171 |
gcacagaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctgg |
5135072 |
T |
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| Q |
110 |
cttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag |
177 |
Q |
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| T |
5135071 |
cttcaactatgtactgagtggtgactaacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5135004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 5099904 - 5099736
Alignment:
| Q |
18 |
gaggagtttgcagaaaccatgggagacagcatc---ctgatactgaaatgtgat------tataagttgcattaggcgacgctaaaagctgaacaatctg |
108 |
Q |
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| T |
5099904 |
gaggagtttgcagaaaccatgggaggcagcatcatcctgatactgaaatgtgatgcgtattataagttgtattaggcgacgctaaaagctgaataatctg |
5099805 |
T |
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| Q |
109 |
gcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag |
177 |
Q |
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| T |
5099804 |
gcttcaactatgtacttagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5099736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 5057969 - 5058132
Alignment:
| Q |
24 |
tttgcagaaaccatgggagacagcatcctgatactgaaatgtg------attataagttgc-------attaggcgacgctaaaagctgaacaatctggc |
110 |
Q |
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| T |
5057969 |
tttgcagaaaccatgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacattaggtgacgataaaagctgaacaatctggc |
5058068 |
T |
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| Q |
111 |
ttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttat |
175 |
Q |
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| T |
5058069 |
ttcaactatgtatttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttat |
5058132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
| Q |
174 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac |
273 |
Q |
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| T |
30975250 |
atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac |
30975349 |
T |
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| Q |
274 |
atcaaatttcgaagg |
288 |
Q |
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| T |
30975350 |
atcaaatttcaaagg |
30975364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 30975414 - 30975450
Alignment:
| Q |
304 |
actctcaattattcaaaatagccaaccaactatacac |
340 |
Q |
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| T |
30975414 |
actcacaattgttcaaaatagccaaccaactatacac |
30975450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
| Q |
174 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat |
236 |
Q |
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| T |
19909688 |
atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat |
19909626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 15856545 - 15856581
Alignment:
| Q |
304 |
actctcaattattcaaaatagccaaccaactatacac |
340 |
Q |
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| T |
15856545 |
actcacaattgttcaaaatagccaaccaactatacac |
15856581 |
T |
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