View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_4 (Length: 601)
Name: NF19009_low_4
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 56 - 590
Target Start/End: Original strand, 28188606 - 28189140
Alignment:
| Q |
56 |
acttcaaataatagttcaactgtacttagatttatatatatattttacttgcatcttgtgatgcaaaccaaaaatatgaaaaggcaatgtaactcaattg |
155 |
Q |
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| T |
28188606 |
acttcaaataatagttcaactgtacttagatttatatatat--tttacttgcatcttgtgatgcaaaccaaaaatatgaaaaggcaatgtaactcaattg |
28188703 |
T |
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| Q |
156 |
atttatattcccaccnnnnnnn--atgaatatatggtactcatgaacataatgtcacttctaaattgtaaataatcatttgacttatagagatccat--- |
250 |
Q |
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| T |
28188704 |
at--ataatcccacctttttttttatgaatatatggtactcatgaacataatgtcaattctaa-ttgtaaataatcatttgacttatagagatccatttt |
28188800 |
T |
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| Q |
251 |
---gctatttaccctaaagaaagtt-atcattgttatttatttatttccaagnnnnnnnnnnnnnnnctacaaagttaagcgaattacgagacatgcaaa |
346 |
Q |
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| T |
28188801 |
gatgctatttaccctaaagaaagttgatcattgttatttatttatttccaagaaaaaaaataaaaa-ctacaaagtta-gcgaattatgagacatgcaaa |
28188898 |
T |
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| Q |
347 |
cgtcgaaaatgtcataaaaaataaaacacttgaggttcttaggagaagttcccattacacgcaaataagnnnnnnnnnttcaaattaagactaaaattag |
446 |
Q |
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| T |
28188899 |
cgtcgaaaatgtcataaaaaataaaacacttgagctccttagaagaagttcccattacacgcaaataagaaaaaaa--ttcaaattaagactaaaattaa |
28188996 |
T |
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| Q |
447 |
ctaagcaatcagaagatctaaatttgccaactcattttcctaaggtctcagatgcaccatatcaaagtaggaatattcccgttaatatcgcagtttcatg |
546 |
Q |
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| T |
28188997 |
caaagcaatcagatgatctaaatttgcgaactcattttcctaaggtctgagatgcaccatatcaaagtaggaatattcccgttaatatcgcagtttcatg |
28189096 |
T |
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| Q |
547 |
taaccatgtcgactaattacaatttcgagtcactcaacttgatg |
590 |
Q |
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| T |
28189097 |
taaccatgtcgactaattacaatttcaagtcactcaacttgatg |
28189140 |
T |
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