View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_42 (Length: 345)

Name: NF19009_low_42
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_42
NF19009_low_42
[»] chr4 (5 HSPs)
chr4 (14-328)||(4911229-4911546)
chr4 (11-89)||(31759652-31759730)
chr4 (15-86)||(53475539-53475610)
chr4 (11-89)||(37109345-37109423)
chr4 (12-89)||(7292793-7292870)
[»] chr1 (2 HSPs)
chr1 (153-212)||(9113247-9113306)
chr1 (43-95)||(19940898-19940950)
[»] chr7 (4 HSPs)
chr7 (12-89)||(43215188-43215265)
chr7 (16-94)||(23735226-23735304)
chr7 (11-89)||(26459404-26459482)
chr7 (15-93)||(42711958-42712036)
[»] chr6 (3 HSPs)
chr6 (12-89)||(12188298-12188375)
chr6 (11-89)||(1056679-1056757)
chr6 (12-73)||(20863395-20863456)
[»] chr5 (3 HSPs)
chr5 (11-75)||(37258360-37258424)
chr5 (18-93)||(16436618-16436692)
chr5 (11-89)||(25627061-25627139)
[»] chr2 (2 HSPs)
chr2 (11-86)||(13803502-13803577)
chr2 (14-89)||(25218690-25218765)
[»] chr8 (2 HSPs)
chr8 (11-89)||(6436549-6436627)
chr8 (11-89)||(18540302-18540380)
[»] scaffold0258 (1 HSPs)
scaffold0258 (13-97)||(15319-15403)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 4911229 - 4911546
Alignment:
Q  14 agagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtgagttgtataatgtattattattag 113  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||    
T  4911229 agagaatcgaatatgaaacgttgagtaggagcacactcctaagtcccaagctaataccaccagaccaacccaagtgagttgtataatgtattattattag 4911328  T
Q  114 tttaagtcgtttgaggtagtttatatatttcgattaata---ttttaacatacaaattctaaattgttggcaattgctccttcgtgagccaattatttaa 210  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  4911329 tttaagtcgtttgaggtagtttatatatttcgattaatagaattttaacatacaaattctaaattgttggcaattgctccttctttagccaattatttaa 4911428  T
Q  211 atgtatattcgtattcgtatattcttttgatggaaatcatcaaagttatatatactaataagtttctcgaaaatgtttgatgtacaatcatataatgtat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4911429 atgtatattcgtattcgtatattcttttgatggaaatcatcaaagttatatatactaataagtttctcgaaaatgtttgatgtacaatcatataatgtat 4911528  T
Q  311 acactttgagagataaat 328  Q
    ||||||||||||||||||    
T  4911529 acactttgagagataaat 4911546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 31759652 - 31759730
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    |||| |||||||||| ||| || |||||||  |||||||||| ||||||||||| || |||||||||||||||||||||    
T  31759652 cagaaagaatcgaatctgagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtg 31759730  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 53475539 - 53475610
Alignment:
Q  15 gagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaa 86  Q
    ||||||||||| |||||| |||||||  | |||||||| | ||||||| | |||||||||||| ||||||||    
T  53475539 gagaatcgaatctgaaactttgaggaagatcacactccaaggtcccaaaccaacaccactagaccaacccaa 53475610  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 37109345 - 37109423
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||||||||||||  ||| || |||||||  |||||||||| | ||||||||| || ||||||||  |||||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 37109423  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 7292793 - 7292870
Alignment:
Q  12 agagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    |||||||||||||  ||| || |||||||  |||||||||| | || |||||| || ||||||||| |||||||||||    
T  7292793 agagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtg 7292870  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 9113306 - 9113247
Alignment:
Q  153 ttttaacatacaaattctaaattgttggcaattgctccttcgtgagccaattatttaaat 212  Q
    |||||||||||||||| || ||||||| ||||||||||||  ||||| ||||||||||||    
T  9113306 ttttaacatacaaattgtacattgttgacaattgctccttgttgagctaattatttaaat 9113247  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 19940898 - 19940950
Alignment:
Q  43 agcacactcctaagtcccaagctaacaccactagatcaacccaagtgagttgt 95  Q
    |||||||||| | | |||||||||||||||| ||| ||||||||||| |||||    
T  19940898 agcacactccaaggacccaagctaacaccaccagaccaacccaagtgggttgt 19940950  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 43215265 - 43215188
Alignment:
Q  12 agagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    |||||||||||||  ||| || |||||||  |||||||||| | ||||||||| || ||||||||| |||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtg 43215188  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 23735226 - 23735304
Alignment:
Q  16 agaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtgagttg 94  Q
    |||||||||||||| || |||||||  |||||| ||| || | | |||| || ||||||||||||||||||||| ||||    
T  23735226 agaatcgaatatgagactttgaggaggagcacaatcccaaattctaagccaataccactagatcaacccaagtgggttg 23735304  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 26459404 - 26459482
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||||||||||||  ||| || |||||||  |||||||||| | ||||||||| || ||||||||  |||||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 26459482  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 42712036 - 42711958
Alignment:
Q  15 gagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtgagtt 93  Q
    |||||||||| |||| || |||||||  |||||||||| | || ||||||||| |||||||   |||||||||||||||    
T  42712036 gagaatcgaacatgagaccttgaggaggagcacactcccatgtaccaagctaataccactaagccaacccaagtgagtt 42711958  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 12188298 - 12188375
Alignment:
Q  12 agagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    |||||||||||||  |||||| |||||||  |||||||||| | ||||||||| || ||||||||  |||||||||||    
T  12188298 agagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 12188375  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 1056679 - 1056757
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||||||||||||  | |||| |||||||  |||| ||||| |||||||| || || |||||||| ||||||||||||    
T  1056679 cagagagaatcgaacttaaaaccttgaggatgagcatactcccaagtcccaggccaataccactaggtcaacccaagtg 1056757  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20863456 - 20863395
Alignment:
Q  12 agagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccac 73  Q
    |||||||||| ||| ||| || |||||||  |||||||||| ||||||||||| ||||||||    
T  20863456 agagagaatcaaatctgagaccttgaggaggagcacactccaaagtcccaagccaacaccac 20863395  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 37258360 - 37258424
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccacta 75  Q
    ||||||||||||||  |||||| |||||||  ||||||||||||  ||||||||||| |||||||    
T  37258360 cagagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagctaataccacta 37258424  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 16436692 - 16436618
Alignment:
Q  18 aatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtgagtt 93  Q
    ||||||| |||| || |||||||  |||||||||| ||||||||||| || ||||||||  |||||||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacactcc-aagtcccaagccaataccactaggccaacccaagtgagtt 16436618  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 25627139 - 25627061
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||||||||||||  ||| || |||||||  |||||||||| |||| |||||| || ||||||||  |||||||||||    
T  25627139 cagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtg 25627061  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 13803577 - 13803502
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaa 86  Q
    |||||| |||||||  ||| || |||||||  |||||||||||||||| ||||| || | ||||||||||||||||    
T  13803577 cagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactagatcaacccaa 13803502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 25218765 - 25218690
Alignment:
Q  14 agagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    |||||||||||| |||||| ||||| | |||||||||   | ||||||| | ||||||||| ||||||||||||||    
T  25218765 agagaatcgaatttgaaactttgagaagaagcacacttgaaggtcccaaaccaacaccactggatcaacccaagtg 25218690  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 6436549 - 6436627
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||| ||||||||| ||| || ||| |||  |||||||||||||||||||||| || ||||| ||  |||||||||||    
T  6436549 cagagggaatcgaatctgagaccttgcggaggagcacactcctaagtcccaagccaataccaccagggcaacccaagtg 6436627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 18540380 - 18540302
Alignment:
Q  11 cagagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtg 89  Q
    ||||||||||||||  ||| || ||||||| ||| ||||||| | ||||||||| || ||||||||  |||||||||||    
T  18540380 cagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtg 18540302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 15319 - 15403
Alignment:
Q  13 gagagaatcgaatatgaaacgttgaggacaagcacactcctaagtcccaagctaacaccactagatcaacccaagtgagttgtat 97  Q
    ||||||||||||  ||| || | |||||  |||||||||| | ||||||||| || ||||| ||| ||||||||||| |||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttgtat 15403  T

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