View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_45 (Length: 342)

Name: NF19009_low_45
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_45
NF19009_low_45
[»] chr8 (1 HSPs)
chr8 (1-323)||(1424597-1424919)
[»] chr3 (4 HSPs)
chr3 (1-304)||(50057776-50058096)
chr3 (1-201)||(28095451-28095658)
chr3 (227-304)||(28095338-28095414)
chr3 (139-201)||(46146808-46146870)
[»] chr2 (2 HSPs)
chr2 (120-268)||(25475651-25475810)
chr2 (120-197)||(41894250-41894327)
[»] chr5 (1 HSPs)
chr5 (1-100)||(1673774-1673873)
[»] chr7 (3 HSPs)
chr7 (126-304)||(29442848-29443034)
chr7 (207-274)||(39363782-39363849)
chr7 (120-181)||(3006880-3006941)
[»] chr1 (1 HSPs)
chr1 (120-201)||(2411885-2411966)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 1424597 - 1424919
Alignment:
Q  1 ataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataa 100  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424597 ataaaccaacatgtacgtctctgacatgctcaggtacatctctttctccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataa 1424696  T
Q  101 accatataaccaatactgaattctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattat 200  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||    
T  1424697 accatataaccaatactggattctggagccactgaccacatgacacccttacttacatacttctccacttattcaccttgtcttagcaacaagaaaatat 1424796  T
Q  201 ctatcacttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagccta 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424797 ctatcacttataactgtagcaggttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagccta 1424896  T
Q  301 atttgcactccctatatctcttc 323  Q
    ||||||||||| |||||||||||    
T  1424897 atttgcactccgtatatctcttc 1424919  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 50057776 - 50058096
Alignment:
Q  1 ataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataa 100  Q
    ||||||||| || |||||||||| ||||| ||||||||||||||| ||||| ||||||| |||||||| |||||| |||| ||||||||||||| |||||    
T  50057776 ataaaccaagatgtacgtctctggcatacacaggtacatctctttctccacatccacttggtaagtctcaattttctgttggatttaatgcttcggataa 50057875  T
Q  101 accatataacca-------atactgaattctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaag 193  Q
    ||||| ||||||       |||||  ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||||    
T  50057876 accatctaaccaatattggatactagattctggagccactaaccacatgacacccctacacacacacttttccacttattcaccttgtcctagcaacaag 50057975  T
Q  194 aaattatcta-----------tcacttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttcc 282  Q
    ||| |||| |           || ||| |||| |||||  ||  ||||||||||||||||| |||||||||||||||| |||||||||||| | ||| ||    
T  50057976 aaaatatccatagcagatagttcccttctaaccgtagcgggtcgaggaaatgtccaaataagcccaactataatcctagaaaatgtccttc-atattccc 50058074  T
Q  283 aaaatgtccactagcctaattt 304  Q
    ||| ||||||||||||||||||    
T  50058075 aaattgtccactagcctaattt 50058096  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28095658 - 28095451
Alignment:
Q  1 ataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataa 100  Q
    |||||||||||| ||  ||||| |||||| || |||||||||||| || ||||||| || |||||||| | |||| | ||  |||||||||||| |||||    
T  28095658 ataaaccaacatgtaaatctctaacatacacatgtacatctctttctctacttccatttggtaagtctcatttttctcttgaatttaatgcttcggataa 28095559  T
Q  101 accatataaccaatactgaat-------tctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaag 193  Q
    ||||| ||||||||| || ||       |||||||||||  | ||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||    
T  28095558 accatctaaccaatattggatattagattctggagccaccgagcacatgacacccttacccacacacttttacacttattcaccttatcctagcaacaag 28095459  T
Q  194 aaattatc 201  Q
    ||| ||||    
T  28095458 aaaatatc 28095451  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 28095414 - 28095338
Alignment:
Q  227 aggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 304  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||| | ||| ||||| || |||||||||||||||    
T  28095414 aggaaatgtccagataagcccaactataatcctacaaaatatccttc-atattcccaaattgcccactagcctaattt 28095338  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 46146870 - 46146808
Alignment:
Q  139 catgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc 201  Q
    ||||||||||||||| ||| |  ||||||||||| ||||||||||||||||||||||| ||||    
T  46146870 catgacacccttacccacagaagtctccacttatacaccttgtcctagcaacaagaaaatatc 46146808  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 25475810 - 25475651
Alignment:
Q  120 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatcta-----------tcact 208  Q
    |||||||||||||| ||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||||| |||  |           || ||    
T  25475810 attctggagccactgaccacatgacaccgtaagccacacacttctccacttattcaccttatcctagcaacaagaaaatatacatagcatatggttccct 25475711  T
Q  209 tataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgt 268  Q
    ||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||||||    
T  25475710 tataattgtagcaggttaaggaaatgtccaaataagatcaactataatcctacaaaatgt 25475651  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 41894250 - 41894327
Alignment:
Q  120 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaat 197  Q
    |||||||||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| ||||    
T  41894250 attctggagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagcaacaaaaaat 41894327  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1673873 - 1673774
Alignment:
Q  1 ataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataa 100  Q
    |||||||||||| ||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| |||||| |||| ||||||||||||| |||||    
T  1673873 ataaaccaacatgtacgtctttggcatactcaagtacatctctttctccacttccacttggtaagtctcaattttctgttggatttaatgcttcggataa 1673774  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 29443034 - 29442848
Alignment:
Q  126 gagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatcta-----------tcacttataac 214  Q
    |||||||| ||||||||||||||||| | ||||||  |||||||||||| ||||||||||| ||||||| |||||| |           || |||| ||     
T  29443034 gagccactcaccacatgacacccttatccacacac--ctccacttattctccttgtcctagaaacaagagattatcaacggaagatggttcccttaaaat 29442937  T
Q  215 tgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 304  Q
    |||||||  |||||||||| ||||||||||| |||||||| |||||||||||||||||  | |||  ||||||||| |||||||||||||    
T  29442936 tgtagcagattaaggaaatttccaaataaacacaactatagtcctacaaaatgtcctt-tatattcgcaaaatgtcaactagcctaattt 29442848  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 39363849 - 39363782
Alignment:
Q  207 cttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttca 274  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  39363849 cttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttca 39363782  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 3006880 - 3006941
Alignment:
Q  120 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgt 181  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| || || ||||||||||||    
T  3006880 attctggagccactgaccacatgacacctttacccacacacttttctacctattcaccttgt 3006941  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 2411885 - 2411966
Alignment:
Q  120 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc 201  Q
    ||||| |||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| ||| ||||    
T  2411885 attctagagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagtaacaaaaaaatatc 2411966  T

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