View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_46 (Length: 340)
Name: NF19009_low_46
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 6352333 - 6352642
Alignment:
| Q |
5 |
gttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcctgtatgacaaaattaaatttag |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
6352333 |
gttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatcaagtatgtacaatctattgtcttggatagcctgtatgacaaaataaaatttag |
6352432 |
T |
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| Q |
105 |
cttcggtggtttacttgaatnnnnnnnnttcaatcatggagaaaa-tattaattgaaccaagtccatgaggtgtcaacccagtggttaaagtcgacctta |
203 |
Q |
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|| | ||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352433 |
ctactgtggtttacttgaataaaaaaaattcaatcatggagaaaaatattaatcaaactaagtccatgaggtgtcaacccagtggttaaagtcgacctta |
6352532 |
T |
|
| Q |
204 |
taacctagagggacagatttcaaattttctcccggacgaatttcacgaacgccactttggaaaaagaataatagaactaatcaaatatgtcattacctgt |
303 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
6352533 |
taacctcaagggatagatttcaaattttctcccggacgaaattcacgaacgccactttggaaaaa----aatagaactgatcaaatatgtcattacctgt |
6352628 |
T |
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| Q |
304 |
tctacagtgacccc |
317 |
Q |
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||||| |||||||| |
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| T |
6352629 |
tctacggtgacccc |
6352642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 7459164 - 7459269
Alignment:
| Q |
1 |
ctcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcctgtatgacaaaattaaat |
100 |
Q |
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|||||||||||||||| ||||||||||||||| || | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
7459164 |
ctcagttgcatttattctcctcaaatatggaattagtagatcgtggtgatcaagtatgtacaatttattgttttggatagcctgtatgacaaaataaaat |
7459263 |
T |
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| Q |
101 |
ttagct |
106 |
Q |
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|||||| |
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| T |
7459264 |
ttagct |
7459269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 6363272 - 6363372
Alignment:
| Q |
5 |
gttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcctgtatgacaaaattaaatttag |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||| || |||||||||||| ||||||| |||||||| |
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| T |
6363272 |
gttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcctgttccacaaaataaaatttag |
6363371 |
T |
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| Q |
105 |
c |
105 |
Q |
| |
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| |
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| T |
6363372 |
c |
6363372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 6370131 - 6370223
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcctgtatgacaaaa |
94 |
Q |
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|||||| |||||| |||||||||||||||| ||| | ||||||||||| ||||||||||||||||||| || |||||||||| ||||||| |
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| T |
6370131 |
tcagtttcatttactttcctcaaatatggatagattgcatcgtggtgatcaagtatgtacaatctattgtcttcgatagcctgttagacaaaa |
6370223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6274593 - 6274674
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcct |
83 |
Q |
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|||| ||||||||||||||||| ||||||| | | || |||||||| ||| |||||||||||| | ||| |||||||||||| |
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| T |
6274593 |
tcagctgcatttattttcctcagatatggatataacgagtcgtggtaatcaagtatgtacaatttgttggtttggatagcct |
6274674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6331977 - 6332058
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcct |
83 |
Q |
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||||||| ||||||||||||||||||||||| | ||||| |||||||| |||||||| | || |||||||||||||||| |
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| T |
6331977 |
tcagttgagtttattttcctcaaatatggaaatattgggtcatggtgatcaagtatgtaaagcctgttgttttggatagcct |
6332058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6424173 - 6424255
Alignment:
| Q |
1 |
ctcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcct |
83 |
Q |
| |
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||||||||||||||||||||||||||||||| | | ||| | |||||| || ||||||||| | |||||||||||||||| |
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| T |
6424173 |
ctcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacaatttgttgttttggatagcct |
6424255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6321472 - 6321553
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcct |
83 |
Q |
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|||| ||||||||||||||||| ||||||| | | | ||| |||||||| |||||||| | || |||||||||||||||| |
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| T |
6321472 |
tcagctgcatttattttcctcagatatggatatattgagtcatggtgatcaagtatgtaaagcctgttgttttggatagcct |
6321553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 6288852 - 6288928
Alignment:
| Q |
9 |
catttattttcctcaaatatggaaagagcgggtcgtggtgatcgagtatgtacaatctattgttttggatagcctgt |
85 |
Q |
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|||||||||| |||||||||||||| | | ||| |||| ||| |||||||| | ||| ||||| |||||||||||| |
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| T |
6288852 |
catttattttgctcaaatatggaaatattgagtcttggtaatcaagtatgtaaagtctcttgttatggatagcctgt |
6288928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 6410267 - 6410299
Alignment:
| Q |
3 |
cagttgcatttattttcctcaaatatggaaaga |
35 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
6410267 |
cagttgcatttattttcctcaaatatggtaaga |
6410299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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