View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_47 (Length: 339)

Name: NF19009_low_47
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_47
NF19009_low_47
[»] chr6 (4 HSPs)
chr6 (119-324)||(20433009-20433216)
chr6 (152-324)||(20400815-20400989)
chr6 (2-83)||(20432902-20432983)
chr6 (1-83)||(20400444-20400528)
[»] chr7 (2 HSPs)
chr7 (119-186)||(3584111-3584178)
chr7 (119-181)||(13703282-13703344)
[»] chr4 (2 HSPs)
chr4 (119-186)||(4815856-4815923)
chr4 (133-186)||(10981670-10981723)
[»] chr8 (3 HSPs)
chr8 (134-179)||(16936360-16936405)
chr8 (119-186)||(15920032-15920099)
chr8 (7-83)||(26575368-26575444)
[»] chr2 (2 HSPs)
chr2 (119-179)||(33133693-33133753)
chr2 (119-186)||(14690135-14690202)
[»] chr1 (2 HSPs)
chr1 (119-187)||(11067124-11067192)
chr1 (119-179)||(40780780-40780840)
[»] chr3 (1 HSPs)
chr3 (121-173)||(22354749-22354801)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 20433009 - 20433216
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataac--agaaaaataagccaaaattcaatgaacataactaaa 216  Q
    ||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||   |||||   || | ||||||||||||||||||| |||    
T  20433009 aataacaggaacaatataatattattataggaaaatttacttaaggatataattggaataaacaagaaagtcaacctaaaattcaatgaacataaccaaa 20433108  T
Q  217 tttcaaatatctttaagaccaaaagacttatttacacaagctctttataggggggcttgtaagatgcacaaccttaatagagctatgattattacataaa 316  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||  ||||||||||||    
T  20433109 attcaaatatctttaagaacaaaagacttatttacacaagctctttataagggggcctgtaagatgcacaaccctaatagagctatttttattacataaa 20433208  T
Q  317 tattattc 324  Q
    ||||||||    
T  20433209 tattattc 20433216  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 152 - 324
Target Start/End: Original strand, 20400815 - 20400989
Alignment:
Q  152 aatttacctaaggatataattggaataacagaaaaat-aagccaaaattcaatgaacataactaaatttcaaatatctttaagaccaaaagacttattta 250  Q
    ||||||| |||||||||||||||||||||| |||  | || |||||||||||||||||||||  || ||||||||||||||||| | |||||||||||||    
T  20400815 aatttacttaaggatataattggaataacaaaaatgtcaacccaaaattcaatgaacataacccaaattcaaatatctttaagaactaaagacttattta 20400914  T
Q  251 cacaagctctttataggggggcttgtaagatgcacaa-ccttaatagagctatgattattacataaatattattc 324  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  20400915 cacaagctctttataggggggcttgtaagatgcacaacccttaatagagctatttttattacataaatattattc 20400989  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 20432902 - 20432983
Alignment:
Q  2 gattgaagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 83  Q
    |||||||||||||||||||| |||| | ||||||||||||||||| |||||| |||||||||||| | | ||||||||||||    
T  20432902 gattgaagggaagagacaatctagtaagctataattcatttttaattggatgtacggtgaagagatactgtggtgtgaaaga 20432983  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20400444 - 20400528
Alignment:
Q  1 ggattgaagggaagagacaatgtagttatctataattcatttttaactgg--atgcacggtgaagagacattatggtgtgaaaga 83  Q
    |||| |||||||||||||||| |||||| ||||| |||||||||||||||  ||| ||   ||||||||||| ||||||||||||    
T  20400444 ggatggaagggaagagacaatctagttacctatagttcatttttaactggatatgtacatagaagagacattgtggtgtgaaaga 20400528  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 3584178 - 3584111
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 186  Q
    |||||||| |||| |||||||||||||||||||||||| | ||||  |||||||||||||||| ||||    
T  3584178 aataacaccaacaatataatattattataagaaaatttgcttaagcgtataattggaataacaaaaaa 3584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 13703344 - 13703282
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataaca 181  Q
    ||||| || |||| ||||| ||||||||||||||||||   ||||||||||||||||||||||    
T  13703344 aataaaactaacaatataagattattataagaaaatttgtttaaggatataattggaataaca 13703282  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 4815923 - 4815856
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 186  Q
    |||||||| |||| ||||| ||||||||| |||||||| | ||||| |||||||||||||||| ||||    
T  4815923 aataacaccaacaatataacattattatacgaaaatttgcttaagggtataattggaataacaaaaaa 4815856  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 10981670 - 10981723
Alignment:
Q  133 tataatattattataagaaaatttacctaaggatataattggaataacagaaaa 186  Q
    ||||| ||||||||||||||||||   ||||| |||||||||||||||| ||||    
T  10981670 tataacattattataagaaaatttgtttaagggtataattggaataacaaaaaa 10981723  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 16936405 - 16936360
Alignment:
Q  134 ataatattattataagaaaatttacctaaggatataattggaataa 179  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  16936405 ataatattattataagaaaatttatttaagggtataattggaataa 16936360  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 15920099 - 15920032
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 186  Q
    |||||||| |||| ||||| ||||||||||||||||||   ||||| ||||||| |||||||| ||||    
T  15920099 aataacaccaacaatataacattattataagaaaatttgtttaagggtataattagaataacaaaaaa 15920032  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 26575368 - 26575444
Alignment:
Q  7 aagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 83  Q
    ||||||| ||||||| ||||||  |||| |||||||| |||| |||| ||||| ||||| || | ||||||||||||    
T  26575368 aagggaacagacaatctagttaggtatagttcattttgaactcgatgtacggtcaagaggcagtgtggtgtgaaaga 26575444  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 33133693 - 33133753
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataa 179  Q
    |||||||| |||| || ||||||||||||  ||||||||  ||||||||||||||||||||    
T  33133693 aataacaccaacaataaaatattattatagaaaaatttatttaaggatataattggaataa 33133753  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 14690135 - 14690202
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 186  Q
    |||||||| |||| ||||| ||||||||| |||||| |   ||||| |||||||||||||||||||||    
T  14690135 aataacaccaacaatataacattattataggaaaatatgtttaagggtataattggaataacagaaaa 14690202  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 11067124 - 11067192
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaaa 187  Q
    |||||||| |||| ||||| |||||||| | ||| ||||  |||||||||||||||||||||| |||||    
T  11067124 aataacaccaacaatataacattattattaaaaattttatttaaggatataattggaataacaaaaaaa 11067192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 40780840 - 40780780
Alignment:
Q  119 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataa 179  Q
    |||||||| |||| |||||||||||||||  ||||||||  ||| ||| ||||||||||||    
T  40780840 aataacaccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 40780780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 22354749 - 22354801
Alignment:
Q  121 taacacgaacagtataatattattataagaaaatttacctaaggatataattg 173  Q
    |||||| |||| ||||| |||||||||| ||||||||  ||||||||||||||    
T  22354749 taacaccaacaatataacattattataataaaatttatttaaggatataattg 22354801  T

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