View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_48 (Length: 338)
Name: NF19009_low_48
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_48 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 3553 - 3867
Alignment:
| Q |
19 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3553 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
3652 |
T |
|
| Q |
119 |
gtcagagacaatgaaccaagtcggtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653 |
gtcagaaacaatgaaccaagtcggtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
3752 |
T |
|
| Q |
219 |
tggtcatcaacatgaaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753 |
tggtcatcaacatgaaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaact |
3852 |
T |
|
| Q |
319 |
tcaccaagttctgtg |
333 |
Q |
| |
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|||||||||| |||| |
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| T |
3853 |
tcaccaagttgtgtg |
3867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 3553 - 3867
Alignment:
| Q |
19 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3553 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
3652 |
T |
|
| Q |
119 |
gtcagagacaatgaaccaagtcggtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653 |
gtcagaaacaatgaaccaagtcggtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
3752 |
T |
|
| Q |
219 |
tggtcatcaacatgaaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753 |
tggtcatcaacatgaaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaact |
3852 |
T |
|
| Q |
319 |
tcaccaagttctgtg |
333 |
Q |
| |
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|||||||||| |||| |
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| T |
3853 |
tcaccaagttgtgtg |
3867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 44371299 - 44371106
Alignment:
| Q |
19 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371299 |
catgacagaatccactatgactggaggagacttttctgctctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagg |
44371200 |
T |
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| Q |
119 |
gtcagagacaatgaaccaagtcggtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttg |
216 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371199 |
gtcagaaacaatgaaccaa----gtcgatattgtaagtacacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttg |
44371106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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