View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_49 (Length: 332)

Name: NF19009_low_49
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_49
NF19009_low_49
[»] chr8 (3 HSPs)
chr8 (1-317)||(23931763-23932079)
chr8 (49-79)||(21135953-21135983)
chr8 (49-78)||(13323439-13323468)
[»] chr1 (2 HSPs)
chr1 (49-83)||(36362725-36362759)
chr1 (49-79)||(33708570-33708600)
[»] chr7 (3 HSPs)
chr7 (49-79)||(33625419-33625449)
chr7 (49-79)||(45958359-45958389)
chr7 (49-79)||(46331382-46331412)
[»] chr5 (2 HSPs)
chr5 (49-79)||(38693099-38693129)
chr5 (49-78)||(41139661-41139690)
[»] chr3 (3 HSPs)
chr3 (49-79)||(1429916-1429946)
chr3 (49-79)||(32943625-32943655)
chr3 (49-79)||(45234972-45235002)
[»] chr2 (2 HSPs)
chr2 (49-79)||(18672825-18672855)
chr2 (49-79)||(43932394-43932424)
[»] chr4 (2 HSPs)
chr4 (80-145)||(5880913-5880978)
chr4 (49-78)||(10322331-10322360)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 23932079 - 23931763
Alignment:
Q  1 aaatggatacaaatgttttaaattttcgactgctcttagtatcggccattgagcccaatatcacttatagaaccaattcataacgagaccaaaacccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23932079 aaatggatacaaatgttttaaattttcgactgctcttagtatcggccattgagcccaatatcacttatagaaccaattcctaacgagaccaaaacccatt 23931980  T
Q  101 gccttatcacttggccactcctcattttcaatccgacattaataattaaatttgaatatataaagcgacaattctaaccttacaagtcagttttctaaga 200  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23931979 gccttatcacttggccactccccattttcaattcgacactaataattaaatttgaatatataaagtgacaattctcaccttacaagtcagttttctaaga 23931880  T
Q  201 gtgggttaagccaatttcaaaaccaaacagatacattaaacgtggaaactgaatttacaaatgaaagatatgaaatccaagtttgaaaagaaacaggagc 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  23931879 gtgggttaagccaatttcaaaaccaaacagatacattaaaagtggaaattgaatttacaaatgaaagatacgaaatccaagtttgaaaagaaacgagagc 23931780  T
Q  301 ttaacaagacttctgac 317  Q
    |||||||||||||||||    
T  23931779 ttaacaagacttctgac 23931763  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 21135953 - 21135983
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  21135953 ttgagcccaatatcacttatagaaccaattc 21135983  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 13323468 - 13323439
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaatt 78  Q
    ||||||||||||||||||||||||||||||    
T  13323468 ttgagcccaatatcacttatagaaccaatt 13323439  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 36362759 - 36362725
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattcataa 83  Q
    |||||||||||||||||||||||||||||||||||    
T  36362759 ttgagcccaatatcacttatagaaccaattcataa 36362725  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 33708600 - 33708570
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  33708600 ttgagcccaatatcacttatagaaccaattc 33708570  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 33625419 - 33625449
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  33625419 ttgagcccaatatcacttatagaaccaattc 33625449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 45958389 - 45958359
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  45958389 ttgagcccaatatcacttatagaaccaattc 45958359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 46331382 - 46331412
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  46331382 ttgagcccaatatcacttatagaaccaattc 46331412  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 38693129 - 38693099
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  38693129 ttgagcccaatatcacttatagaaccaattc 38693099  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 41139661 - 41139690
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaatt 78  Q
    ||||||||||||||||||||||||||||||    
T  41139661 ttgagcccaatatcacttatagaaccaatt 41139690  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 1429916 - 1429946
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  1429916 ttgagcccaatatcacttatagaaccaattc 1429946  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 32943625 - 32943655
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  32943625 ttgagcccaatatcacttatagaaccaattc 32943655  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 45235002 - 45234972
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  45235002 ttgagcccaatatcacttatagaaccaattc 45234972  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 18672825 - 18672855
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  18672825 ttgagcccaatatcacttatagaaccaattc 18672855  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 43932424 - 43932394
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaattc 79  Q
    |||||||||||||||||||||||||||||||    
T  43932424 ttgagcccaatatcacttatagaaccaattc 43932394  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 5880978 - 5880913
Alignment:
Q  80 ataacgagaccaaaacccattgccttatcacttggccactcctcattttcaatccgacattaataa 145  Q
    |||||| ||||||||||| |||||||| ||||||||||| || ||||||  || ||||| ||||||    
T  5880978 ataacgggaccaaaacccgttgccttaccacttggccacgccccattttttattcgacactaataa 5880913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 10322331 - 10322360
Alignment:
Q  49 ttgagcccaatatcacttatagaaccaatt 78  Q
    ||||||||||||||||||||||||||||||    
T  10322331 ttgagcccaatatcacttatagaaccaatt 10322360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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