View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_51 (Length: 328)

Name: NF19009_low_51
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_51
NF19009_low_51
[»] chr7 (1 HSPs)
chr7 (19-311)||(45531243-45531535)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 45531243 - 45531535
Alignment:
Q  19 cagaattgtcttctttccaagcactgaacctcctcgcattctcatcacttcctctggttccttcactactctcgccatcgcttcaaaaccacgcgccacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531243 cagaattgtcttctttccaagcactgaacctcctcgcattctcatcacttcctctggttccttcactactctcgccatcgcttcaaaaccacgcgccacc 45531342  T
Q  119 aatgcagaatatgcggagaagaagatgaagatgaagatgtaatgtgtattgtgtaaatgtttgcgaagttactttaaacaaggagggaaagtattgagaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45531343 aatgcagaatatgcggagaagaagatgaagatgaagatgtaatgtgtattgtgtaaatgtttgcgaagttactttaaacaaggaaggaaagtattgagaa 45531442  T
Q  219 ttgagaaagagttaagagttgttgttaatctgtggtttatcgtttttaagtgagtttatataactaacttgtcaacttcacatggattttcat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531443 ttgagaaagagttaagagttgttgttaatctgtggtttatcgtttttaagtgagtttatataactaacttgtcaacttcacatggattttcat 45531535  T

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