View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_54 (Length: 316)
Name: NF19009_low_54
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 7753103 - 7753399
Alignment:
| Q |
18 |
aaaagcaccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccatctctcctacctttgcct |
117 |
Q |
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||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
7753103 |
aaaagcacctcctcttcccacatgaaaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccacctctcctaccttagcct |
7753202 |
T |
|
| Q |
118 |
ccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactagagttgagaccattacc |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7753203 |
ccttttggtccgaaatagaatagagcctcagatacctacttctaaaactactatctcctctccatatgtcaccccaaaaactagagttgagaccattacc |
7753302 |
T |
|
| Q |
214 |
aactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaagcccatctctgctcc |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
7753303 |
aacttgtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggcccttccaccaaatagaagcccatctcggctcc |
7753399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 40386523 - 40386819
Alignment:
| Q |
18 |
aaaagcaccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccatctctcctacctttgcct |
117 |
Q |
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||||||||| |||||| |||||||| ||||||||| |||||| |||| || ||||||| |||||||||||||||| |||||| |||||| ||||| |||| |
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| T |
40386523 |
aaaagcacctcctcttcccacatgaaaagatgtctcctccaaataaagttccactccgtgccaaactccgacaccaaacccacctctcccaccttagcct |
40386622 |
T |
|
| Q |
118 |
ccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactagagttgagaccattacc |
213 |
Q |
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||||||| ||||| |||||||| |||||| |||| ||| ||||| || |||||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
40386623 |
ccttttgatccgagatagaataaagcctcatatacaaactcctaaagcttctatctcctctccaattgtcacaccaaaaactagagttgagtccattacc |
40386722 |
T |
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| Q |
214 |
aactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaagcccatctctgctcc |
310 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
40386723 |
aacttgtcgctccaaccccgaattaaaccaattaagctccccaaaatcaccaagcttagttagttccttccaccaaatagaagcccatctcggctcc |
40386819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 49456269 - 49455987
Alignment:
| Q |
18 |
aaaagcaccccctctttccacatgagaagatgtcttctccaagtaaaatttcactccgagccaaactccgacacccaacccatctctcctacctttgcct |
117 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||||| |||| || || ||||||| || ||||||| | || |||| |||||| ||| |||| |
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| T |
49456269 |
aaaagcacctcctcttcccacatgaaaagatgtcttttccacaagaatttccactccgtacctaactccggctccacccccacctctccaaccgaggcct |
49456170 |
T |
|
| Q |
118 |
ccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactagagttgagaccattacc |
213 |
Q |
| |
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|| ||||| |||| |||||| | ||||| |||||| |||||| || || || || |||||||| |||| |||||||||||| ||||| ||||| || |
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| T |
49456169 |
ccatttgggccgagatagaaaaaagcctaggatacttacttcggaagcttctttcccctctccaagtatcactccaaaaactagaattgaggccattgcc |
49456070 |
T |
|
| Q |
214 |
aactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaag |
296 |
Q |
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| | ||||| | ||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
49456069 |
cattttccgctcaagcccggaattaaaccaattaagttcaccaaaatcaccaagcttaattagctccttccacgaaagagaag |
49455987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 17991282 - 17991323
Alignment:
| Q |
231 |
ccgaattgaaccaattaagctccccaaaatcaccaagcttaa |
272 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
17991282 |
ccgaattaaaccaattaagctcaccaaaatcaccaagcttaa |
17991323 |
T |
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