View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_58 (Length: 308)
Name: NF19009_low_58
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 53049106 - 53048820
Alignment:
| Q |
6 |
agcagcacagagaagagaatacgcattttacaaaagaacaaattctaacatataataaaatcacaatgaactcgtctactcatacctttaagtgaccgag |
105 |
Q |
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| T |
53049106 |
agcagctcagagaagagaatacgcattttacaaaagaacaaattctaacatataataaaatcacaatgaactcgtctactcatacctttaagtgaccgag |
53049007 |
T |
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| Q |
106 |
gaatcaatttttctcgtgctgatggtggttcaaaagtagaagtaagatgagatatggctgatgatttaggtgccagcgttgctgaatctggtgtcttaga |
205 |
Q |
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| T |
53049006 |
gaatcaatttttctcgtgctgatggtggttcaaaagtagaagtaagatgagatatggctgatgatttaggtgccagcgttgctaaatctggtgtcttaga |
53048907 |
T |
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| Q |
206 |
ttttgggtacagttttctaatcattggaggtggggttgaaaggtttctaacattagagttctcgaaagtagctgccaatgcattgaa |
292 |
Q |
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| T |
53048906 |
ttttgggtacagttttctaatcattggaggtggggttgaaaggtttctaacatttgagttctcgaaagtagctgccaatgcattgaa |
53048820 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 15957096 - 15957261
Alignment:
| Q |
88 |
tacctttaagtgaccgaggaatcaatttttctcgtgctgatggtggtt---caaaagtagaagtaagatgagatatggctgatgatttaggtgccagcgt |
184 |
Q |
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||||||||| ||||||||| |||| |||||||||| || ||||||| ||||| |||||||||| || ||||||| ||||| | ||| || | |
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| T |
15957096 |
tacctttaactgaccgaggtatcatagtttctcgtgcagaaggtggttgttcaaaactagaagtaagtgcagctatggctttagattttgatgctagtat |
15957195 |
T |
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| Q |
185 |
tgctgaatctggtgtcttagattttgggtacagttttctaatcattggaggtggggttgaaaggtt |
250 |
Q |
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| T |
15957196 |
tgcagaatctggagtcgtagatttcggatacagttttcttattactggaggtggagttgaaaggtt |
15957261 |
T |
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