View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_59 (Length: 303)
Name: NF19009_low_59
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 43638371 - 43638085
Alignment:
| Q |
13 |
aatatggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43638371 |
aatatggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgca |
43638272 |
T |
|
| Q |
113 |
acagtgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggtacgtattttaaactttttcactcgaagtcaatgtgttgaaca |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43638271 |
acaatgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggtatgtattttaaactttttcactcgaagtcaatgtgttgaaca |
43638172 |
T |
|
| Q |
213 |
ttaaattccgtg--------actgtgttagtacttcatatatcttaattaacgattatctatttaagaattgcatttatcataaaat |
291 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43638171 |
ttaaattccgtgtctgtgtaactgtgttagtacttaatatatcttaattaacgactatctatttaagaattgcatttatcataaaat |
43638085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 34697391 - 34697243
Alignment:
| Q |
15 |
tatggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgcaac |
114 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || ||||| ||||| || || |||| |||||||||||| |||||||| || ||| |||| ||| | | |
|
|
| T |
34697391 |
tatggtggacgtgttgagcttgctaaagcctattacaaagcactgacctcatcagtgaagaaacatttcaatggcaatggagttattgccagcatggagc |
34697292 |
T |
|
| Q |
115 |
agtgcaacgatttcatgttccttggtacagaaaccatttcacttggacg |
163 |
Q |
| |
|
| |||||||| ||| | ||||||| |||||| ||||||| |||||||| |
|
|
| T |
34697291 |
attgcaacgacttctttctccttggcacagaagccatttcccttggacg |
34697243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 488438 - 488534
Alignment:
| Q |
75 |
aaacatttcaaaggcaatggtgtcatttccagtatgcaacagtgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggta |
171 |
Q |
| |
|
||||||||||| || |||||||||||| | || ||| |||| ||||| ||||||||||| ||||| || ||| |||| || ||||| || ||||||| |
|
|
| T |
488438 |
aaacatttcaatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgttggta |
488534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University