View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_60 (Length: 299)
Name: NF19009_low_60
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 10586223 - 10586410
Alignment:
| Q |
94 |
atgtctaactaaaaatatttattgcaattatgtgacaaaatatttgtagcgattaaaaagatatacataaatctaaaaaacaactgattgaaaatattga |
193 |
Q |
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| T |
10586223 |
atgtctaactaaaaatatttattgcaattatgtgacaaaatatttgtagcgattaaaaagatatacataaatctaaaaaacaactgattgaaaatattga |
10586322 |
T |
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| Q |
194 |
atttttatggtataagaaaggtaaagagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttct |
281 |
Q |
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| T |
10586323 |
attttgatggtataagaaaggtaaagagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttct |
10586410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 10498897 - 10498834
Alignment:
| Q |
218 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttct |
281 |
Q |
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| T |
10498897 |
agagagaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttct |
10498834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10499614 - 10499578
Alignment:
| Q |
1 |
caccccttcacaaattcaacaactcattcaaccaaag |
37 |
Q |
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| T |
10499614 |
caccccttcacaaattcaacaactcattcaaccaaag |
10499578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10586140 - 10586176
Alignment:
| Q |
1 |
caccccttcacaaattcaacaactcattcaaccaaag |
37 |
Q |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
10586140 |
caccccttcacaaattaatcaactcattcaaccaaag |
10586176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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