View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_61 (Length: 292)
Name: NF19009_low_61
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6935792 - 6935517
Alignment:
| Q |
1 |
gcgagcatgctttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6935792 |
gcgagcatgctttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgt |
6935693 |
T |
|
| Q |
101 |
ttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataaga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935692 |
ttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataaga |
6935593 |
T |
|
| Q |
201 |
gtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcattggtgtgtcagaatgtgaaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6935592 |
gtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcattggtgtgccagaatgtgaaaa |
6935517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 6943437 - 6943253
Alignment:
| Q |
92 |
tataaatgtttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaacc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |
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| T |
6943437 |
tataaatgtttgcaacttcacttttggttatgataattcaacaaacacttacaagttggtgttgttcagttcggaaagggtcgacgaccttatgaaaacc |
6943338 |
T |
|
| Q |
192 |
gtgataagagtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcattggtgtgtcagaatgtgaaaa |
276 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6943337 |
gtggtaagagtttttactttgggtgataatgattggagagacattgattgtttgcatgtggcattggtgtgtcagaatgtgaaaa |
6943253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 6921904 - 6921672
Alignment:
| Q |
30 |
gccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggttatgataatt |
129 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||| |||||| || | | |||||||||||||||||| ||||||||||||| || |
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| T |
6921904 |
gccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccagg------aaaaatgtttgcaacttcacatttggttatgatattt |
6921811 |
T |
|
| Q |
130 |
caacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaaccgtgataagagtttttactttgggtgataatgattg |
226 |
Q |
| |
|
||| ||||||||||||| | |||||||| ||||| ||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
6921810 |
caatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagtttttactttgggtgataatgattg |
6921711 |
T |
|
| Q |
227 |
gagagacattgattgtttgcaagtggcattggtgtgtca |
265 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| |||| |
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|
| T |
6921710 |
gagagacattgattgtttgcctgtggtattggtgcgtca |
6921672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 6954992 - 6954845
Alignment:
| Q |
114 |
tttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactttgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||| | || ||||| |||| | | | |||||||||||||| |
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|
| T |
6954992 |
tttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgg |
6954893 |
T |
|
| Q |
214 |
gtgataatgattggagagacattgattgtttgcaagtggcattggtgt |
261 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | |||| |||||||| |
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|
| T |
6954892 |
gtgataatgtttggagagatattgattgtttcccggtggaattggtgt |
6954845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 6948372 - 6948221
Alignment:
| Q |
95 |
aaatgtttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtg |
194 |
Q |
| |
|
|||| ||||||| ||| | ||||||||||||||||||| ||||||||||||| | ||||| || || || ||| ||| | ||| |||| | ||||| | |
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|
| T |
6948372 |
aaatatttgcaagttcgcctttggttatgataattcaatagacacttacaaggttgtgttgttatgtatgaaaatggatggcgaacttaatacaaccgcg |
6948273 |
T |
|
| Q |
195 |
ataagagtttttactttgggtgataatgattggagagacattgattgtttgc |
246 |
Q |
| |
|
| | | ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6948272 |
gttaaactttttactttgggtgataatgattggagagaaattgattgtttgc |
6948221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 6948449 - 6948392
Alignment:
| Q |
12 |
ttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgca |
69 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
6948449 |
ttctctttttggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgca |
6948392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 6955085 - 6955028
Alignment:
| Q |
12 |
ttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgca |
69 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
6955085 |
ttctctttttggaaccctgccacaaggacaaagtctgaagcattattgtcttttcgca |
6955028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 1986508 - 1986280
Alignment:
| Q |
31 |
ccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggttatgataattc |
130 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| || | | |||| ||||||| ||| | ||||||||||||||||| |
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|
| T |
1986508 |
ccacaaggacaaaatatgaagcattggtgtcttttcgcaactatcccaagcccaag------aaaaatatttgcaagttcgcgtttggttatgataattc |
1986415 |
T |
|
| Q |
131 |
aacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactttgggtgataatgattggaga |
230 |
Q |
| |
|
|||||||||||||||| | |||| || ||||| ||||||| | || || || | ||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
1986414 |
aacagacacttacaagattttgttgttatgtttgaaaagggatggtgagctgattacaaccgccgtaagagtttttactttgggttataatgattggaga |
1986315 |
T |
|
| Q |
231 |
gacattgattgtttgcaagtggcattggtgtgtca |
265 |
Q |
| |
|
|| ||||||||||||| |||| | |||||||||| |
|
|
| T |
1986314 |
gaaattgattgtttgcctgtggtagtggtgtgtca |
1986280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 15572386 - 15572253
Alignment:
| Q |
114 |
tttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaaccgtgataagagtttttactt |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || ||| | ||||||| | |||| |||| | | ||||| ||||||| ||||||| |
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|
| T |
15572386 |
tttggttatgataattcaaccgacacttacaaggtggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtatttactt |
15572287 |
T |
|
| Q |
211 |
tgggtgataatgattggagagacattgattgttt |
244 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| |
|
|
| T |
15572286 |
tgggtgataacgtttggagagatattgattgttt |
15572253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
| Q |
108 |
ttcacttttggttatgataattcaacagacacttacaagttggtg |
152 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12820365 |
ttcacatttggttatgataattcaactgacacttacaaggtggtg |
12820321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 22080468 - 22080516
Alignment:
| Q |
105 |
aacttcacttttggttatgataattcaacagacacttacaagttggtgt |
153 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
22080468 |
aacttcacgtttggttatgataattcaacagaaacttataaggtggtgt |
22080516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 13417389 - 13417350
Alignment:
| Q |
114 |
tttggttatgataattcaacagacacttacaagttggtgt |
153 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
13417389 |
tttggttatgataattcaacggacacttacaaggtggtgt |
13417350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 5437279 - 5437247
Alignment:
| Q |
108 |
ttcacttttggttatgataattcaacagacact |
140 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
5437279 |
ttcacttttggttatgatgattcaacagacact |
5437247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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