View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_62 (Length: 290)
Name: NF19009_low_62
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 21575888 - 21575622
Alignment:
| Q |
19 |
gcacgtagacaccgatcgataatagttttagaaaatagaagttattgtaagttgtatataaactgtgggtggtctgaaagcggaaaccagattgtggttg |
118 |
Q |
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| T |
21575888 |
gcacgtagtcaccgatcgataatagttttagaaaatagaagttattgtaagttgtatataaactgtgggtggtctgaaagcggaaa-ctgattgtggttg |
21575790 |
T |
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| Q |
119 |
ggcctaacataacctcgcagaaccagcttgtgcattgtcagaccatctcttatccgatataa-nnnnnnnnaccaagagttatgnnnnnnnataggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
21575789 |
ggcctaacataacctcgcagaaccagcttgtgcattgtcagaccatctcttatccgatataatttttttttatcaagagttatgtttttttataggaaaa |
21575690 |
T |
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| Q |
218 |
tgatagtaagttaatggttaagttagtttctaggattcaaatatcggagctattacataaaactccct |
285 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21575689 |
tgatagtaagttaatggttaagttagtttctagtattcaaatatcggagctattacataaaactccct |
21575622 |
T |
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