View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_64 (Length: 278)
Name: NF19009_low_64
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 37976348 - 37976199
Alignment:
| Q |
13 |
atactcaacactttgtgctatatgtcattattcaatgttcacatcaatgctcctttggccataatgccagagacactccaatagctttagttctgtcatg |
112 |
Q |
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| T |
37976348 |
atactcaacactttgtgctatatgtcattattcaatgttcacatcaatgctcctttggccataatgccagagacactccaatagctttagttctgtcatg |
37976249 |
T |
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| Q |
113 |
cagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
162 |
Q |
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| T |
37976248 |
cagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
37976199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 37976152 - 37976070
Alignment:
| Q |
188 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtac |
270 |
Q |
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| T |
37976152 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtac |
37976070 |
T |
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