View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_65 (Length: 271)

Name: NF19009_low_65
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_65
NF19009_low_65
[»] chr4 (12 HSPs)
chr4 (16-103)||(2176212-2176301)
chr4 (3-98)||(36839505-36839602)
chr4 (3-102)||(36838215-36838316)
chr4 (210-269)||(6092720-6092779)
chr4 (209-271)||(43176591-43176653)
chr4 (211-271)||(18884467-18884527)
chr4 (224-271)||(2449013-2449060)
chr4 (209-268)||(11565914-11565973)
chr4 (224-271)||(37296174-37296221)
chr4 (224-271)||(37855896-37855943)
chr4 (224-271)||(48806548-48806595)
chr4 (209-271)||(48807349-48807411)
[»] chr3 (17 HSPs)
chr3 (209-271)||(51755813-51755875)
chr3 (209-271)||(6143719-6143781)
chr3 (209-271)||(7941158-7941220)
chr3 (217-271)||(7941969-7942023)
chr3 (209-271)||(20485494-20485556)
chr3 (211-271)||(45076212-45076272)
chr3 (209-271)||(4274913-4274975)
chr3 (209-271)||(45075394-45075456)
chr3 (224-271)||(32593075-32593122)
chr3 (224-271)||(32743244-32743291)
chr3 (209-271)||(10658871-10658933)
chr3 (209-271)||(11270247-11270309)
chr3 (209-271)||(20484680-20484742)
chr3 (217-271)||(30294835-30294889)
chr3 (209-271)||(31890205-31890267)
chr3 (229-271)||(32592285-32592327)
chr3 (209-269)||(14043863-14043923)
[»] chr2 (13 HSPs)
chr2 (209-271)||(37294377-37294439)
chr2 (209-271)||(29407020-29407083)
chr2 (209-271)||(28419455-28419517)
chr2 (209-271)||(29407850-29407912)
chr2 (209-271)||(33222664-33222726)
chr2 (229-271)||(1728832-1728874)
chr2 (209-271)||(28139519-28139581)
chr2 (224-271)||(6232702-6232749)
chr2 (229-271)||(12252455-12252497)
chr2 (209-271)||(28138628-28138690)
chr2 (209-270)||(30271122-30271183)
chr2 (209-270)||(30273114-30273175)
chr2 (230-270)||(23266193-23266233)
[»] chr8 (15 HSPs)
chr8 (209-271)||(13783071-13783133)
chr8 (209-271)||(34892772-34892834)
chr8 (209-269)||(13782283-13782343)
chr8 (217-271)||(16940239-16940293)
chr8 (209-271)||(40740954-40741016)
chr8 (210-271)||(39207685-39207746)
chr8 (224-271)||(36345894-36345941)
chr8 (224-271)||(36595909-36595956)
chr8 (217-271)||(3086394-3086448)
chr8 (237-271)||(35206623-35206657)
chr8 (209-271)||(37656769-37656831)
chr8 (224-270)||(38134102-38134148)
chr8 (209-270)||(3641694-3641755)
chr8 (237-269)||(39512389-39512421)
chr8 (219-271)||(41471999-41472051)
[»] chr6 (4 HSPs)
chr6 (209-271)||(15546352-15546414)
chr6 (209-271)||(35096686-35096748)
chr6 (209-271)||(17338727-17338789)
chr6 (236-271)||(11159394-11159429)
[»] chr5 (6 HSPs)
chr5 (209-271)||(42912841-42912903)
chr5 (209-271)||(2169735-2169797)
chr5 (209-267)||(30192540-30192598)
chr5 (217-269)||(41623013-41623065)
chr5 (224-271)||(40789170-40789217)
chr5 (209-271)||(30966607-30966669)
[»] chr1 (7 HSPs)
chr1 (209-271)||(18609858-18609920)
chr1 (209-271)||(41908990-41909052)
chr1 (209-271)||(12628098-12628160)
chr1 (209-271)||(21268729-21268791)
chr1 (224-271)||(12627276-12627323)
chr1 (209-271)||(13761007-13761069)
chr1 (229-271)||(21699943-21699985)
[»] chr7 (10 HSPs)
chr7 (224-271)||(38555127-38555174)
chr7 (209-271)||(13645305-13645367)
chr7 (209-271)||(14102311-14102373)
chr7 (209-271)||(14412328-14412390)
chr7 (209-271)||(38555376-38555438)
chr7 (209-271)||(11886007-11886068)
chr7 (209-271)||(13644469-13644531)
chr7 (224-270)||(30845988-30846034)
chr7 (209-270)||(48001339-48001400)
chr7 (211-271)||(47751148-47751208)
[»] scaffold0092 (1 HSPs)
scaffold0092 (209-271)||(54613-54675)
[»] scaffold1379 (1 HSPs)
scaffold1379 (209-270)||(398-459)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 2176212 - 2176301
Alignment:
Q  16 ctttttgtggccgaaagtaatt-attaagcagcaatgcttgcaattaccgttcttcac-attcggtccttgcattcgtatgctcctacat 103  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  2176212 ctttttgttgccgaaagtaatttattaagcatcaatgcttgcaattaccgttctttactatacggtccttgcattcgtatgctcctacat 2176301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 36839505 - 36839602
Alignment:
Q  3 agcgcattcagccctttttgtggccgaaagtaattattaagcagcaatgcttgcaattaccgttcttc---acattcggtccttgcattcgtatgctcc 98  Q
    |||| |||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||| ||||||    ||| |||| ||||||||||||||||||    
T  36839505 agcgtattcagccctttttgttgccaaaagtaatgattaagcatcaatgcttgcaattacc-ttcttctatccatacggttcttgcattcgtatgctcc 36839602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 36838215 - 36838316
Alignment:
Q  3 agcgcattcagccctttttgtggccgaaagtaattattaagcagcaatgcttgcaattaccgttctt---cacattcggtccttgcattcgtatgctcct 99  Q
    |||| ||||| |||||||||| || ||||||||| |||||||| ||||||||||||||| |||||||   | ||| |||| ||||||||||||||||| |    
T  36838215 agcgtattcaaccctttttgttgctgaaagtaatgattaagcatcaatgcttgcaatta-cgttcttctacccatacggttcttgcattcgtatgctctt 36838313  T
Q  100 aca 102  Q
    |||    
T  36838314 aca 36838316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 6092779 - 6092720
Alignment:
Q  210 gaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaataca 269  Q
    |||||| |||||| |||| || ||||||||||||||| |||||||||||||| |||||||    
T  6092779 gaaaacttcggcagttaactgtcgaagaattttaaacttgaaattaaataaggaaataca 6092720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 43176653 - 43176591
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| | |||| |||||| ||||||||||||||||||| |||||||||    
T  43176653 ggaaaacttcggcagttaactaccgaggaatttcaaacctgaaattaaataaggaaatacacc 43176591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 18884527 - 18884467
Alignment:
Q  211 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||| |||||| |||| |||||| |||||| |||||| |||||||||||| |||||||||    
T  18884527 aaaacttcggcagttaactgccgaggaatttcaaacctaaaattaaataaggaaatacacc 18884467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 2449013 - 2449060
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  2449013 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 2449060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 11565914 - 11565973
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatac 268  Q
    ||||||| ||| || |||| || ||| |||||||||||||||||||||||||| ||||||    
T  11565914 ggaaaacttcgacagttaactgtcgaggaattttaaacctgaaattaaataagaaaatac 11565973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 37296221 - 37296174
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  37296221 ttaattgccgaggaatttcaaacctgaaattaaataaggaaatacacc 37296174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 37855896 - 37855943
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  37855896 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 37855943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 48806548 - 48806595
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  48806548 ttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacc 48806595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 48807411 - 48807349
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||| || |||||| |||||| |||||||||||| |||||||||    
T  48807411 ggaaaacttcggcagttaactgctgatgaatttcaaaccttaaattaaataaggaaatacacc 48807349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 51755875 - 51755813
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  51755875 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacc 51755813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 6143719 - 6143781
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||||||||||||||||||||||| || ||||||    
T  6143719 ggaaaacttcggcagttaactgccgaggaattttaaacctgaaattaaataaggaactacacc 6143781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 7941158 - 7941220
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  7941158 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 7941220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 7942023 - 7941969
Alignment:
Q  217 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  7942023 tcggcagttaaatgccgaggaatttcaaacctgaaattaaataagaaaatacacc 7941969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 20485556 - 20485494
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  20485556 ggaaaacttcggcaattaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 20485494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 45076272 - 45076212
Alignment:
Q  211 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  45076272 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 45076212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 4274975 - 4274913
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||| | |||| ||||||| ||||| ||||||||||||||||||| |||||||||    
T  4274975 ggaaaacttcggtagttaactgccgaaaaatttcaaacctgaaattaaataaggaaatacacc 4274913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 45075394 - 45075456
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| | |||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  45075394 ggaaaactttggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 45075456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 32593122 - 32593075
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  32593122 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 32593075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 32743244 - 32743291
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  32743244 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 32743291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 10658871 - 10658933
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| | |||| |||| |||||| |||||| ||| ||||||||||||||| |||||||||    
T  10658871 ggaaaactttggcagttaactgccgaggaatttcaaatctgaaattaaataaggaaatacacc 10658933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 11270309 - 11270247
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||  ||||| |||||| |||||||||||| |||||||||    
T  11270309 ggaaaacttcggcagttaactgccgagaaatttcaaacctaaaattaaataaggaaatacacc 11270247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 20484680 - 20484742
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||  ||||||||| | ||||||||||||| |||||||||    
T  20484680 ggaaaacttcggcagttaactgccgattaattttaaatcagaaattaaataaggaaatacacc 20484742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 30294889 - 30294835
Alignment:
Q  217 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| |||| ||||    
T  30294889 tcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatgcacc 30294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 31890267 - 31890205
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| ||| || ||||||||||||||||||| || ||||||    
T  31890267 ggaaaacttcggcagttaactgccgatgaacttaaaacctgaaattaaataaggaagtacacc 31890205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 32592285 - 32592327
Alignment:
Q  229 tgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||||| ||||||||||||||||||| |||||||||    
T  32592285 tgccgaggaatttcaaacctgaaattaaataaggaaatacacc 32592327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 14043923 - 14043863
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaataca 269  Q
    ||||||| |||||| |||| ||||||  ||||| || |||||||||||||||| |||||||    
T  14043923 ggaaaacttcggcagttaactgccgagaaatttcaagcctgaaattaaataaggaaataca 14043863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 37294377 - 37294439
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  37294377 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacc 37294439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 29407020 - 29407083
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaa-cctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  29407020 ggaaaacttcggcagttaactgccgaagaatttcaaaacctgaaattaaataagtaaatacacc 29407083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 28419455 - 28419517
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  28419455 ggaaaacttcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatacacc 28419517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 29407912 - 29407850
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  29407912 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 29407850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 33222664 - 33222726
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  33222664 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 33222726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 1728832 - 1728874
Alignment:
Q  229 tgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  1728832 tgccgaagaatttcaaacctgaaattaaataaggaaatacacc 1728874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 28139581 - 28139519
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||| || |||||| ||||||||||||||||||| |||||||||    
T  28139581 ggaaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacc 28139519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 6232702 - 6232749
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  6232702 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 6232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 12252497 - 12252455
Alignment:
Q  229 tgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||||| ||||||||||||||||||| |||||||||    
T  12252497 tgccgaggaatttcaaacctgaaattaaataaggaaatacacc 12252455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 28138628 - 28138690
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||| || |||||||||||| |||||||||    
T  28138628 ggaaaacttcggcagttaactgccgaggaatttcaaatctaaaattaaataagaaaatacacc 28138690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 30271122 - 30271183
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    ||||||| |||| | |||| || ||||||| || ||||||||||||||||||| ||||||||    
T  30271122 ggaaaacttcggtagttaactgtcgaagaacttaaaacctgaaattaaataaggaaatacac 30271183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 30273175 - 30273114
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    |||||||||||| | |||| |||||| ||| || |||||| |||||||||||| ||||||||    
T  30273175 ggaaaacctcggtagttaattgccgaggaacttaaaacctaaaattaaataaggaaatacac 30273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 23266233 - 23266193
Alignment:
Q  230 gccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    ||||| |||||| ||||||||||||||||||| ||||||||    
T  23266233 gccgaggaatttcaaacctgaaattaaataaggaaatacac 23266193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 13783133 - 13783071
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  13783133 ggaaaacttcggcagttaactgtcgaagaatttcaaacctgaaattaaataaggaaatacacc 13783071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 34892834 - 34892772
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  34892834 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 34892772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 13782283 - 13782343
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaataca 269  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||    
T  13782283 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaataca 13782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 16940293 - 16940239
Alignment:
Q  217 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  16940293 tcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 16940239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 40740954 - 40741016
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| || ||| ||||||||||||||||||| |||||||||    
T  40740954 ggaaaacttcggcagttaactgccgaggattttcaaacctgaaattaaataaggaaatacacc 40741016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 39207685 - 39207746
Alignment:
Q  210 gaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| ||| || |||| |||||| |||||||||| ||||||||||||||| |||||||||    
T  39207685 gaaaacttcgacagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacc 39207746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 36345941 - 36345894
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  36345941 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 36345894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 36595956 - 36595909
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  36595956 ttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacc 36595909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 3086448 - 3086394
Alignment:
Q  217 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||| |||||| |||||| |||| |||||||||||||| |||||||||    
T  3086448 tcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacc 3086394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 35206657 - 35206623
Alignment:
Q  237 aattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||||||||||||||||||||| |||||||||    
T  35206657 aattttaaacctgaaattaaataaggaaatacacc 35206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 37656831 - 37656769
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||| | |||||| |||| |||||||||||||| |||||||||    
T  37656831 ggaaaacttcggcagttaactgccaaggaatttcaaacatgaaattaaataaggaaatacacc 37656769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 38134148 - 38134102
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||    
T  38134148 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacac 38134102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 3641694 - 3641755
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    |||||||||||| | |||| |||||| ||| || |||| |||||||||||||| ||||||||    
T  3641694 ggaaaacctcgggaattaactgccgatgaacttaaaacttgaaattaaataaggaaatacac 3641755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 39512389 - 39512421
Alignment:
Q  237 aattttaaacctgaaattaaataagtaaataca 269  Q
    ||||||||||||||||||||||||| |||||||    
T  39512389 aattttaaacctgaaattaaataaggaaataca 39512421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 41472051 - 41471999
Alignment:
Q  219 ggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||| |||||| |||||| |||||| |||||||||||| |||||||||    
T  41472051 ggcagttaactgccgaggaatttcaaaccttaaattaaataaggaaatacacc 41471999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 15546414 - 15546352
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  15546414 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 15546352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 35096686 - 35096748
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||||||||| |||||| |||||||||||| |||||||||    
T  35096686 ggaaaacttcggcagttaactgccgaagaatttcaaacctaaaattaaataagaaaatacacc 35096748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 17338789 - 17338727
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||  ||||||||| ||||||||||||||| |||||||||    
T  17338789 ggaaaacttcggcaattaactgccgagaaattttaaatctgaaattaaataagaaaatacacc 17338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 11159429 - 11159394
Alignment:
Q  236 gaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||||||||||||||||||||||| |||||||||    
T  11159429 gaattttaaacctgaaattaaataaggaaatacacc 11159394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 42912903 - 42912841
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||||||||| |||||||||| |||||||| |||||||||    
T  42912903 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaactaaataaggaaatacacc 42912841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 2169735 - 2169797
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| | ||||||||||| |||||| |||||||||||| |||||||||    
T  2169735 ggaaaacttcggcagttaactaccgaagaatttcaaacctaaaattaaataagaaaatacacc 2169797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 30192540 - 30192598
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaata 267  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||    
T  30192540 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaata 30192598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 41623065 - 41623013
Alignment:
Q  217 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaataca 269  Q
    |||||| |||| || |||||||||| ||||||||||||||||||| |||||||    
T  41623065 tcggcagttaactgtcgaagaatttcaaacctgaaattaaataagaaaataca 41623013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 40789217 - 40789170
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  40789217 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 40789170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 30966669 - 30966607
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| ||| || |||||| |||||||||||| |||||||||    
T  30966669 ggaaaacttcggcagttaactgccgaggaacttaaaaccttaaattaaataagaaaatacacc 30966607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 18609920 - 18609858
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  18609920 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 18609858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 41908990 - 41909052
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||  ||||||||||||||||||||||||||||| |||||||||    
T  41908990 ggaaaacttcggcagttaactgttgaagaattttaaacctgaaattaaataaggaaatacacc 41909052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 12628160 - 12628098
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| || ||| |||||| ||||||||||||||||||| |||||||||    
T  12628160 ggaaaacttcggcagttaactgtcgaggaatttcaaacctgaaattaaataaggaaatacacc 12628098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 21268791 - 21268729
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||| || |||||| ||||||||||||||||||| |||||||||    
T  21268791 ggaaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacc 21268729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 12627276 - 12627323
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||    
T  12627276 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacc 12627323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 13761069 - 13761007
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| ||| || |||| |||||| |||||| |||||| |||||||||||| |||||||||    
T  13761069 ggaaaacttcgacagttaactgccgacgaatttcaaaccttaaattaaataaggaaatacacc 13761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 21699943 - 21699985
Alignment:
Q  229 tgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||||| |||||| ||||||||||||||||||| |||||||||    
T  21699943 tgccgaggaatttcaaacctgaaattaaataagaaaatacacc 21699985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 38555127 - 38555174
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  38555127 ttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacc 38555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 13645367 - 13645305
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| | |||| |||| |||||| |||||||||| ||||||||||||||| |||||||||    
T  13645367 ggaaaacttaggcagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacc 13645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 14102373 - 14102311
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| |||| |||||||||||||| |||||||||    
T  14102373 ggaaaacttcggcagttaactgccgaggaatttcaaacatgaaattaaataaggaaatacacc 14102311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 14412390 - 14412328
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| |||||| |||||| |||| |||||||||||||| |||||||||    
T  14412390 ggaaaacttcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacc 14412328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 38555438 - 38555376
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| ||||||| ||||| |||||| |||||||||||| |||||||||    
T  38555438 ggaaaacttcggcagttaactgccgaaaaatttcaaacctaaaattaaataaggaaatacacc 38555376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 11886007 - 11886068
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| |||| || ||| |||||| ||||||||||||||||||| |||||||||    
T  11886007 ggaaaacttcggca-ttaactgtcgaggaatttcaaacctgaaattaaataagaaaatacacc 11886068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 13644469 - 13644531
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| |||||| ||||  ||| |||||||| ||| ||||||||||||||| |||||||||    
T  13644469 ggaaaacttcggcagttaaccgccaaagaatttcaaatctgaaattaaataaggaaatacacc 13644531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 30845988 - 30846034
Alignment:
Q  224 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||    
T  30845988 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacac 30846034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 48001400 - 48001339
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    ||||||| || ||| |||| |||||| |||||| ||||||||||||||||||  ||||||||    
T  48001400 ggaaaacttcagcaattaactgccgaggaatttcaaacctgaaattaaataaagaaatacac 48001339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 47751208 - 47751148
Alignment:
Q  211 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||| ||| || |||| ||| || |||||| ||||||||||||||||||| |||||||||    
T  47751208 aaaacttcgtcagttaactgcggaggaatttcaaacctgaaattaaataaggaaatacacc 47751148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 54613 - 54675
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacc 271  Q
    ||||||| ||| || |||| |||||| ||||||||||  |||||||||||||| |||||||||    
T  54613 ggaaaacatcgacagttaactgccgaggaattttaaatatgaaattaaataaggaaatacacc 54675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 459 - 398
Alignment:
Q  209 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 270  Q
    |||||||||||| | |||| | |||| ||| || ||||||||||||||||||| ||||||||    
T  459 ggaaaacctcgggagttaactaccgaggaacttaaaacctgaaattaaataaggaaatacac 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University