View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_68 (Length: 264)

Name: NF19009_low_68
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_68
NF19009_low_68
[»] chr8 (3 HSPs)
chr8 (109-250)||(26414718-26414859)
chr8 (109-230)||(5736532-5736653)
chr8 (109-228)||(34954773-34954892)
[»] chr4 (2 HSPs)
chr4 (109-243)||(36658951-36659089)
chr4 (109-168)||(39048565-39048625)
[»] chr1 (3 HSPs)
chr1 (109-230)||(44450699-44450820)
chr1 (109-230)||(44651589-44651710)
chr1 (119-232)||(8465090-8465202)
[»] chr7 (1 HSPs)
chr7 (109-231)||(33379795-33379917)
[»] chr3 (3 HSPs)
chr3 (119-243)||(49086659-49086783)
chr3 (109-228)||(49356730-49356848)
chr3 (112-207)||(33794998-33795094)
[»] chr2 (3 HSPs)
chr2 (109-194)||(2778627-2778712)
chr2 (109-228)||(16333819-16333938)
chr2 (109-228)||(16125687-16125806)
[»] chr6 (1 HSPs)
chr6 (110-232)||(32360257-32360378)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 26414718 - 26414859
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||  |||||||||    
T  26414718 cagacagccaatcaaaatcaaccacgtgtcacccattatccacaaacaatcttctatctccgcctctcctgcagctcacccgcgcctgttagcgcgtgtt 26414817  T
Q  209 gtgcacgcgccatgcttggccaactattggcttccacatgtc 250  Q
    | ||||||||||||||||||||||||||||||||| ||||||    
T  26414818 gcgcacgcgccatgcttggccaactattggcttccgcatgtc 26414859  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 5736532 - 5736653
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    |||||||||| |||| ||||||||     
T  5736532 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcttgtctgcgcgtgta 5736631  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  5736632 gcgcacgcgccatgcttggcca 5736653  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 34954892 - 34954773
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||||||| ||||||||||| ||| |  |||||||||||   |||||||||   ||||||||||||||||| |||||    
T  34954892 cagacagccaatcagaatcagccacgtgtcaacccattatccataaagatgcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcacgtgt 34954794  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || |||||||||| |||||||    
T  34954793 tgcgcacgcgccaggcttggc 34954773  T

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Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 36658951 - 36659089
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaat----cttctctctccacctctcctgcagctcactcgcgcctgtcggcgcg 204  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36658951 cagacagccaatcacaatcagccacgtgtcatccattatccacaaacaatcaatcttctctctccgcctctcctgcagctcactcgcgcctgtcggcgcg 36659050  T
Q  205 tgttgtgcacgcgccatgcttggccaactattggcttcc 243  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  36659051 tgttgcgcacgcgccatgcttggccaactgttggcttcc 36659089  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 39048625 - 39048565
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccac-aaacaatcttctctctc 168  Q
    |||| |||| |||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  39048625 cagaaagccaatcagaatcagccacgtgtcacccattatccactcaacattcttctctctc 39048565  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 44450820 - 44450699
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||     
T  44450820 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccatcactcgcgcctgtcggcgcgtgta 44450721  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  44450720 gcgcacgcgccatgcttggcca 44450699  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 44651589 - 44651710
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||     
T  44651589 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcctgtcggcgcgtgta 44651688  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  44651689 gcgcacgcgccatgcttggcca 44651710  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 8465090 - 8465202
Alignment:
Q  119 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctc-tcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcg 217  Q
    |||||||||||||| ||||||| || ||||||||||  ||||||||||| | |||| | |||||   ||||||||| |||||||||||||||  ||| ||    
T  8465090 atcaaaatcagccatgtgtcacacactatccacaaagcatcttctctcttcgcctcttgctgca--ccactcgcgcttgtcggcgcgtgttgcacacacg 8465187  T
Q  218 ccatgcttggccaac 232  Q
    || |||||| |||||    
T  8465188 ccttgcttgcccaac 8465202  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 33379795 - 33379917
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    |||||| || |||| |||| ||||||| ||| |||||||||| |  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  33379795 cagacaaccaatcacaatctgccacgtttcatccattatccatatgcaatcttgtctctccgcctctcctgcagctcactcgcgcctgtcggcgcgtgtt 33379894  T
Q  209 gtgcacgcgccatgcttggccaa 231  Q
    | ||||| |||||||||||||||    
T  33379895 gcgcacgagccatgcttggccaa 33379917  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 49086659 - 49086783
Alignment:
Q  119 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcgc 218  Q
    |||| ||||||| ||||||||| ||||||||| |  ||||||||||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  49086659 atcacaatcagctacgtgtcactcattatccatatgcaatcttctctctccgcctctcctgcagctcactcgcacctgtcgacgtgtgttgcgcacgcgc 49086758  T
Q  219 catgcttggccaactattggcttcc 243  Q
    |||||||||| || | |||||||||    
T  49086759 catgcttggctaaatgttggcttcc 49086783  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 49356848 - 49356730
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||| ||| ||||||||||||||| | |||||||||| |   ||||||| | | ||||||||||||||||||| |||    
T  49356848 cagacagccaatcagaatcagccacgtatcaacccattatccacaaagattcttctctcttcgt-tctcctg-accccactcgcgcctgtcggcgcttgt 49356751  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || ||||||||||||||||||    
T  49356750 tgcgcacgcgccatgcttggc 49356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 33795094 - 33794998
Alignment:
Q  112 acagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagc-tcactcgcgcctgtcggcgcgtgt 207  Q
    |||||| |||| |||||| |||||||||||||||||||| |||  || |||||||||| |||||||| ||||  |||||| | ||||||| ||||||    
T  33795094 acagccaatcagaatcagtcacgtgtcacccattatccataaagcatattctctctccgcctctcctacagcaacactcgtgtctgtcggtgcgtgt 33794998  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 2778712 - 2778627
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcc 194  Q
    |||||| || ||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  2778712 cagacaaccaatcaaaatcagccacgtgtcatccattatccacaaagaattttctctctccgcctctcctgcagcacactcgcgcc 2778627  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 16333819 - 16333938
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||||||| | ||||||||||||| | ||||||||||||   |||||||||   |||||||||||||||||||||||    
T  16333819 cagacagccaatcagaatcagccacgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtgt 16333917  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || |||||||||| |||||||    
T  16333918 tgcgcacgcgccaagcttggc 16333938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 16125806 - 16125687
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| ||||||||| |||||| | ||||||||||||| | ||||||||||||   |||||||||   |||||||||||||||||||||||    
T  16125806 cagacagccaatcagaatcagccatgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtgt 16125708  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || ||| ||| || |||||||    
T  16125707 tgcgcatgcgtcaggcttggc 16125687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 32360257 - 32360378
Alignment:
Q  110 agacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacct-ctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    |||||||| |||| ||||||||| ||||||| || ||| ||||||  ||||||||||||| ||| || |||||   ||||||||||||| ||||||||||    
T  32360257 agacagccaatcagaatcagccatgtgtcacacactattcacaaagcatcttctctctccgcctcctgctgca--ccactcgcgcctgttggcgcgtgtt 32360354  T
Q  209 gtgcacgcgccatgcttggccaac 232  Q
    |  || ||||| |||||| |||||    
T  32360355 gcacatgcgccttgcttgcccaac 32360378  T

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