View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_7 (Length: 564)
Name: NF19009_low_7
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 44232841 - 44233392
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232841 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
44232940 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataagttgcttgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44232941 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggtacgctaagttcttgaataagttgcttgtttc |
44233040 |
T |
|
| Q |
201 |
tcctggagagccatacaatatagttttagcaggtagcaaataagaaaaacaaacatgacaacaatagcttctatagttgattgattgatatctgtatgca |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44233041 |
tcctggagagccatacaaaatagtttaagcaggtagcaaataagaaaaacaaacatgacaacaatagcttctatagttgattgattaatatctgtatgca |
44233140 |
T |
|
| Q |
301 |
ttagtttacctatatagatcagaacttttgtacaagtcagtgaaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttg |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44233141 |
ttagtttacctatatagatcagaatttttgtacaagtcagtgaaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttg |
44233240 |
T |
|
| Q |
401 |
ctgggttatatccgtctttgattttactcactccgtcaatgctctgcaacgaaagttatttgaaaatttcagtaactaattacaatcaagaaatagagtc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44233241 |
ctgggttatatccgtctttgattttactcactccgtcaatgctctgcaacgaaagttatttgaaaatttcagtaactaattacaatcaagaaatagagtc |
44233340 |
T |
|
| Q |
501 |
attcctgtaaggtaatacttcatttaagtagaggatcctacctcaaaatact |
552 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44233341 |
attcccgtaaggtaatacttcatttaagtagaggatcctacctcaaaatact |
44233392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 44209820 - 44210371
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44209820 |
tgttccaaacatcaaggctatgaatgtcgtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
44209919 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataagttgcttgtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44209920 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgccaagttcttgaataagttgcttgtttc |
44210019 |
T |
|
| Q |
201 |
tcctggagagccatacaatatagttttagcaggtagcaaataagaaaaacaaacatgacaacaatagcttctatagttgattgattgatat-ctgtatgc |
299 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
44210020 |
tcctgaagagacatacaa-atagttaaagcaggtagcaaataagaaaaacaaacatgacaacaatagcttctataggtgatcgattaatatcctgtatgc |
44210118 |
T |
|
| Q |
300 |
attagtttacctatatagatcagaacttttgtacaagtcagtgaaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgtt |
399 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44210119 |
attagtttacctatatagatctgaatttttgtacaaatcggtaaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgtt |
44210218 |
T |
|
| Q |
400 |
gctgggttatatccgtctttgattttactcactccgtcaatgctctgcaacgaaagttatttgaaaatttcagtaactaattacaatcaagaaatagagt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44210219 |
gctgggttatatccgtctttgattttactcactccgtcaatgctctgtaacaaaagttatttgaaaacttcagtaactaattacaatcaagaaatagagt |
44210318 |
T |
|
| Q |
500 |
cattcctgtaaggtaatacttcatttaagtagaggatcctacctcaaaatact |
552 |
Q |
| |
|
|||||| |||| |||| ||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
44210319 |
cattcccttaagttaatgctttgtttaggtagaggattatacctcgaaatact |
44210371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 44222015 - 44222539
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44222015 |
tgttccaaacatcaagcctatgaaggtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
44222114 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataagttgcttgtttc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44222115 |
tggcattgaaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataagttgcttgtttc |
44222214 |
T |
|
| Q |
201 |
tcctggagagccatacaatatagttttagcaggtagcaaataagaaaaacaaacatgacaacaatagcttctatagttgattgatt------gatatctg |
294 |
Q |
| |
|
||||| |||| | || | | | ||| |||| || |||||| | |||||||||||| || |||||||| |||||||| || |||| ||||| |
|
|
| T |
44222215 |
tcctgaagagtcgaaccaaacaatttaagcatgttgcaaatcaagaaaacaaacatggcaccaatagctactatagtttatagattcatatccatatcca |
44222314 |
T |
|
| Q |
295 |
tatgcattagtttacctatatagatcagaacttttgtacaagtcagtgaaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatcc |
394 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||||| || || || ||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44222315 |
tatgcattagtttacctatataaatctgaatttttgtacaaatcggtaaagtcaacacccaaattaagttcttgtgctgtagttgtaacttccaacatcc |
44222414 |
T |
|
| Q |
395 |
atgttgctgggttatatccgtctttgattttactcactccgtcaatgctctg--caacgaaagttatttgaaaatttcagtaactaattacaatcaagaa |
492 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
44222415 |
atgttgctgggttatatccatctttgattttactaactccgtcaatgctctggacaatgaaagttatttgaaaacttcagtaaccagttacaatcaagaa |
44222514 |
T |
|
| Q |
493 |
atagagtcattcctgtaaggtaata |
517 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
44222515 |
agagagtcattcacttaaggtaata |
44222539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2888287 - 2888083
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || || ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
2888287 |
tgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagcc |
2888188 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataagttgcttgtttc |
200 |
Q |
| |
|
|||||||| || || || || ||| |||| | || ||||| |||||| ||||||||||| ||||| || | ||||| |||||||||||||||| |
|
|
| T |
2888187 |
aaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttctataagttgcttgtttc |
2888088 |
T |
|
| Q |
201 |
tcctg |
205 |
Q |
| |
|
||||| |
|
|
| T |
2888087 |
tcctg |
2888083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 2896080 - 2896247
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||| ||| ||| |
|
|
| T |
2896080 |
tgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatgaccaatgttgtttccataggcaagcc |
2896179 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcagg |
168 |
Q |
| |
|
|||||||| | | || || || ||| |||| | | ||||||||||||||| |||||||||||||| |
|
|
| T |
2896180 |
aagcattggatccaaaatgattgtgagtattgggcggagaaatgaagatccttagaaccaggagcagg |
2896247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2878785 - 2878618
Alignment:
| Q |
1 |
tgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttccataagcaggcc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| ||||||| |||||||||||| || || |||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
2878785 |
tgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgcgccaatatgaccaacgttgtttccacaagcaagcc |
2878686 |
T |
|
| Q |
101 |
tggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcagg |
168 |
Q |
| |
|
|||||| || || || || || ||| |||| ||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
2878685 |
aagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagcagg |
2878618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 2887943 - 2887857
Alignment:
| Q |
359 |
taagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgctct |
445 |
Q |
| |
|
||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || |||||||||| |
|
|
| T |
2887943 |
taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct |
2887857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 2896395 - 2896497
Alignment:
| Q |
343 |
aaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgc |
442 |
Q |
| |
|
|||||||| || ||| || |||||||||| | | ||||||||||||||||||| |||||||| ||||| || ||||| |||||||| || || || |||| |
|
|
| T |
2896395 |
aaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgc |
2896494 |
T |
|
| Q |
443 |
tct |
445 |
Q |
| |
|
||| |
|
|
| T |
2896495 |
tct |
2896497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 2878398 - 2878335
Alignment:
| Q |
382 |
acttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgctct |
445 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| ||||| ||||| |||| |
|
|
| T |
2878398 |
acttctaacatccatgttgctgggttatatccatcgtttattttacttactccttcaatactct |
2878335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 39354458 - 39354411
Alignment:
| Q |
375 |
agttgtaacttccaacatccatgttgctgggttatatccgtctttgat |
422 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39354458 |
agttgtgacttccaacatccatgttgctggattataaccgtctttgat |
39354411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 39339615 - 39339570
Alignment:
| Q |
377 |
ttgtaacttccaacatccatgttgctgggttatatccgtctttgat |
422 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39339615 |
ttgtgacttccaacatccatgttgctggattataaccgtctttgat |
39339570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 39367061 - 39367017
Alignment:
| Q |
375 |
agttgtaacttccaacatccatgttgctgggttatatccgtcttt |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39367061 |
agttgtgacttccaacatccatgttgctggattataaccgtcttt |
39367017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 39563370 - 39563414
Alignment:
| Q |
375 |
agttgtaacttccaacatccatgttgctgggttatatccgtcttt |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39563370 |
agttgtgacttccaacatccatgttgctggattataaccgtcttt |
39563414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 1084088 - 1084125
Alignment:
| Q |
382 |
acttccaacatccatgttgctgggttatatccgtcttt |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1084088 |
acttccaacatccatgttgctggattataaccgtcttt |
1084125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 39367338 - 39367298
Alignment:
| Q |
59 |
ggattacgccaatatgaccaacgttgtttccataagcaggc |
99 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
39367338 |
ggattgcgccaataagaccaatgttgtttccataagcaggc |
39367298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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