View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_70 (Length: 263)
Name: NF19009_low_70
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_70 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 36268454 - 36268691
Alignment:
| Q |
11 |
cagagatccaatgagaagtgaaaatgtccctataattcatctcatttcatcaagcatcatttagctagccctagctagcatgcagtttcaagttcccacg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36268454 |
cagagatccaatgagaagtgaaaatgtccctataattcatctcat---------------ttagctagccctagctagcatgcagtttcaagttcccacg |
36268538 |
T |
|
| Q |
111 |
ctccataacctaagcaaaaatagacttccctacattgttatagcttttggcatcatccacattccacagtacatacgtagattttaacattctctttcgt |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36268539 |
ctgcataacctaagcaaaaatagacttccctacattgttatagcttttggcatcatccacattccacagtacatacgtagattttaacattctctttcgt |
36268638 |
T |
|
| Q |
211 |
ttcaaataccaagaaacccaaaatccctttattttcagccattgctcatcttc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36268639 |
ttcaaataccaagaaacccaaaatccctttattttcagccattgctcatcttc |
36268691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University