View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_71 (Length: 262)
Name: NF19009_low_71
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_71 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 7684788 - 7685042
Alignment:
| Q |
8 |
aaattattctcgtgacaagatcttacatactaaaatttaacatgtgagaatccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtc |
107 |
Q |
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| T |
7684788 |
aaatttttctcgtgacaagatcttacatactaaaatttaacatgtgaaaatccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtc |
7684887 |
T |
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| Q |
108 |
cttgggaactttgatcagtagaggcctcggaagttcttttctcattctttcttctttcatgcacaaggagaattgcacatttgcaagtgaaatatagaag |
207 |
Q |
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| T |
7684888 |
cttcggaactttgatcagtagaggcctcggaagttcttttctcattctttcttctttcatgcacaaggagaattgcacatttacaagtgaaatatagaag |
7684987 |
T |
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| Q |
208 |
caacaatccgagagagaaaatgataacgaactcgatgacaataattgttcctaag |
262 |
Q |
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| T |
7684988 |
caacaatccgagacagaaaatgataacgaactcgatgacaataattgttcctaag |
7685042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 13884137 - 13884354
Alignment:
| Q |
37 |
ctaaaatttaacatgtgagaat--ccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtccttgggaactttgatcagtagaggcct |
134 |
Q |
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| T |
13884137 |
ctaaattttaacatgtgagtatatccattcctgaaaacaaa--cattgttgctttgaacacttacagcttgtccttgggaactttgatcagtagatgact |
13884234 |
T |
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| Q |
135 |
cggaagttcttttctcattctttcttctttcatgcacaaggagaattgcacatttgcaagtgaaatatagaagcaacaatccgagagagaaaatgataac |
234 |
Q |
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| T |
13884235 |
ctgaagtccttttctcgcggtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataac |
13884334 |
T |
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| Q |
235 |
gaactcgatgacaataattg |
254 |
Q |
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| T |
13884335 |
gaattcgatgacaataattg |
13884354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 14024262 - 14024479
Alignment:
| Q |
37 |
ctaaaatttaacatgtgagaat--ccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtccttgggaactttgatcagtagaggcct |
134 |
Q |
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| T |
14024262 |
ctaaattttaacatgtgagtatatccattcctgaaaacaaa--cattgttgctttgaacacttacagcttgtccttgggaactttgatcagtagatgact |
14024359 |
T |
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| Q |
135 |
cggaagttcttttctcattctttcttctttcatgcacaaggagaattgcacatttgcaagtgaaatatagaagcaacaatccgagagagaaaatgataac |
234 |
Q |
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| T |
14024360 |
ctgaagtccttttctcgcggtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataac |
14024459 |
T |
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| Q |
235 |
gaactcgatgacaataattg |
254 |
Q |
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| T |
14024460 |
gaattcgatgacaataattg |
14024479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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