View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_73 (Length: 259)
Name: NF19009_low_73
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 7795482 - 7795574
Alignment:
| Q |
152 |
agagggaagagataaatcggaagacagaaaaacagaagtgttggactaccagcgcccaaacgaacacctggtttctcgtacactcgttattcc |
244 |
Q |
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| T |
7795482 |
agagagaagagataaatcggaagacagaaaaacagaagtgttggactaccagcgcccaaacgaacacctggtttctcgtacactcgttattcc |
7795574 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 7794295 - 7794377
Alignment:
| Q |
7 |
gaataaatgttggatagttatttttagtttcatacacaagtactagaaagtttactgtcacattat-atgttggatgttttat |
88 |
Q |
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| T |
7794295 |
gaataaatgttggatagttatttttagtttcatacacaagtactagaaagtttactatcacattataatgttggatgttttat |
7794377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 7795448 - 7795494
Alignment:
| Q |
89 |
tcttaattcttttttgtgcaatataaccacttacatagagaagagat |
135 |
Q |
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| T |
7795448 |
tcttaattcttttttgtgcaatataaccacttacagagagaagagat |
7795494 |
T |
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