View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_8 (Length: 556)

Name: NF19009_low_8
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_8
NF19009_low_8
[»] chr6 (8 HSPs)
chr6 (12-539)||(30569326-30569853)
chr6 (12-241)||(30572860-30573089)
chr6 (240-397)||(30573121-30573278)
chr6 (484-538)||(30573228-30573282)
chr6 (406-462)||(30573449-30573505)
chr6 (275-462)||(30569886-30570063)
chr6 (256-333)||(30573318-30573394)
chr6 (484-534)||(30569957-30570007)
[»] chr4 (4 HSPs)
chr4 (247-377)||(38419582-38419712)
chr4 (240-325)||(38436058-38436143)
chr4 (150-241)||(38419461-38419552)
chr4 (484-522)||(38419682-38419720)


Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 12 - 539
Target Start/End: Original strand, 30569326 - 30569853
Alignment:
Q  12 atgaacaaaattatatctattgtttattcttttactgtatgattagaaatggatggctagggttttatagaatataactatatgattctatgatattgca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30569326 atgaacaaaattatatctattgtttattcttttactgtatgattagaaatggatggctagggttttatagaatataactatatgattctatgatattgca 30569425  T
Q  112 ggaattgtaaataattcaacttatctatgccttttcaggctgtgactgaggagtaccttcatgaaggacaatgtgaatcatcaagacaaagtgtaaagcc 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  30569426 ggaattgtaaataattcaacttatctatgctttttcaggctgtgactgaggagtaccttcatgaaggacaacgtgaatcatcaagacaaaatgtaaagcc 30569525  T
Q  212 ttctcaaaatcaaaacatcaacatgctcaagaaggtggaggaagttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttcta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30569526 ttctcaaaatcaaaacatcaacatgctcaagaaggtggaggaagttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttcta 30569625  T
Q  312 aaagtgaaggcttcattgaaagtactccagagtgacatagaagcagcaacatatttgcttttcctttcgaagaaacctatataatcaagagggtcaagta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30569626 aaagtgaaggcttcattgaaagtactccagagtgacatagaagcagcaacatatttgcttttcctttcgaagaaacctatataatcaagagggtcaagta 30569725  T
Q  412 gattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaattcacgttcggattgtaaacttcattgaggcagcatcatatttgcttctc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30569726 gattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaattcacgttcggattgtaaacttcattgaggcagcatcatatttgcttctc 30569825  T
Q  512 cttgcaaagaaacctatataatcttatg 539  Q
    ||||||||||||||||||||||||||||    
T  30569826 cttgcaaagaaacctatataatcttatg 30569853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 30572860 - 30573089
Alignment:
Q  12 atgaacaaaattatatctattgtttattcttttactgtatgattagaaatggatggctagggttttatagaatataactatatgattctatgatattgca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30572860 atgaacaaaattatatctattgtttattcttttactgtatgattagaaattgatggctagggttttatagaatataactatatgattctatgatattgca 30572959  T
Q  112 ggaattgtaaataattcaacttatctatgccttttcaggctgtgactgaggagtaccttcatgaaggacaatgtgaatcatcaagacaaagtgtaaagcc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||| |||||    
T  30572960 ggaattgtaaataattcaacttatctatgccttttgaggctgtgactgaggagtagcttcatgaagaacaatgtgaatcatcaaaacaaaatgttaagcc 30573059  T
Q  212 ttctcaaaatcaaaacatcaacatgctcaa 241  Q
    ||||| ||||||||||||||||||||||||    
T  30573060 ttctcgaaatcaaaacatcaacatgctcaa 30573089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 240 - 397
Target Start/End: Original strand, 30573121 - 30573278
Alignment:
Q  240 aagaaggtggaggaagttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagtactcc 339  Q
    ||||||||||| |||||||||||||||||| |  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  30573121 aagaaggtggatgaagttgacaaaggtaaattacctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctcc 30573220  T
Q  340 agagtgacatagaagcagcaacatatttgcttttcctttcgaagaaacctatataatc 397  Q
    |  ||||||| || |||||| |||||||| || ||||| | |||||||||||||||||    
T  30573221 atggtgacattgaggcagcatcatatttgattctccttgcaaagaaacctatataatc 30573278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 30573228 - 30573282
Alignment:
Q  484 cattgaggcagcatcatatttgcttctccttgcaaagaaacctatataatcttat 538  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30573228 cattgaggcagcatcatatttgattctccttgcaaagaaacctatataatcttat 30573282  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 30573449 - 30573505
Alignment:
Q  406 caagtagattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaat 462  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  30573449 caagtagattgcagcatataagtctcattggttcggattgtaaagtatgagaaaaat 30573505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 462
Target Start/End: Original strand, 30569886 - 30570063
Alignment:
Q  275 tatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagtactccagagtgacatagaagcagcaacatatttgcttttc 374  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||  ||  |  ||||||| || |  ||| ||| |||| ||  |    
T  30569886 tatttcccctgctgatcttgatttagaggaacttct-aaagtgaaggctttattgaaagagctagatggtgacattgaggtcgcatcatctttgtttcgc 30569984  T
Q  375 ctttcgaagaaacctatataatcaagagggtcaagtagattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaat 462  Q
    ||| | ||||||||||||||||| ||||||||         |||||||| |||  ||||||||||||||||||| | |||||||||||    
T  30569985 cttgcaaagaaacctatataatcgagagggtc---------gcagcatataagcgtcattggttcggattgtaaagtatgagaaaaat 30570063  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 30573318 - 30573394
Alignment:
Q  256 ttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaag 333  Q
    |||||||||| |||||| ||||| ||| |||||||||||||||| | |||||| | ||||||||||||||||||||||    
T  30573318 ttgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaactt-ttaaagtgaaggcttcattgaaag 30573394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 30569957 - 30570007
Alignment:
Q  484 cattgaggcagcatcatatttgcttctccttgcaaagaaacctatataatc 534  Q
    ||||||||  ||||||| |||| ||| ||||||||||||||||||||||||    
T  30569957 cattgaggtcgcatcatctttgtttcgccttgcaaagaaacctatataatc 30570007  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 38419582 - 38419712
Alignment:
Q  247 tggaggaagttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagtactccagagtga 346  Q
    |||||||||||||||||||||||| ||||||    | | |||||||||| |||||||||||||||||||||||| | ||| ||||||  |||||  || |    
T  38419582 tggaggaagttgacaaaggtaaagcctctatggtacctactgatcttgacttagaagaacttctaaaagtgaagacatcactgaaagatctccatggtaa 38419681  T
Q  347 catagaagcagcaacatatttgcttttcctt 377  Q
    ||| || |||||| ||| ||||||| |||||    
T  38419682 cattgaggcagcatcatctttgcttctcctt 38419712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 38436058 - 38436143
Alignment:
Q  240 aagaaggtggaggaagttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttc 325  Q
    |||||||||||||||||| | |||||||||| | ||||| | ||| |||||||| | ||| |||||||||||||||||||| ||||    
T  38436058 aagaaggtggaggaagttaagaaaggtaaagcccctattgcactttctgatcttaacttaaaagaacttctaaaagtgaagtcttc 38436143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 38419461 - 38419552
Alignment:
Q  150 gctgtgactgaggagtaccttcatgaaggacaatgtgaatcatcaagacaaagtgtaaagccttctcaaaatcaaaacatcaacatgctcaa 241  Q
    ||||||||| | | ||||||||||| || | || |||||||||||||| ||| ||| |||||||||| ||| ||||||||||||| ||||||    
T  38419461 gctgtgactaatgtgtaccttcatggagaagaaggtgaatcatcaagaaaaaatgttaagccttctcgaaaccaaaacatcaacaagctcaa 38419552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 522
Target Start/End: Original strand, 38419682 - 38419720
Alignment:
Q  484 cattgaggcagcatcatatttgcttctccttgcaaagaa 522  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  38419682 cattgaggcagcatcatctttgcttctccttgcaaagaa 38419720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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