View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_85 (Length: 238)
Name: NF19009_low_85
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_85 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 7685109 - 7685325
Alignment:
| Q |
5 |
ttgaacttaatgacatgtttaattatgaatacttccaactaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctt |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7685109 |
ttgaacttaatgatatgtttaattatgaatacttccaattaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctt |
7685208 |
T |
|
| Q |
105 |
tctcattaagttaacgatagccttagtatataatggcattgacattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaat |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7685209 |
tctcattaagttaacgatagcctcagtatataattgcattgacattccttcttcacaatctggataacaaccataatttcccatgtcattcaatgtcaat |
7685308 |
T |
|
| Q |
205 |
gttaacgtagctccatg |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7685309 |
gttaacgtagctccatg |
7685325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 13884452 - 13884631
Alignment:
| Q |
42 |
actaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagccttagtatataatggc |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||| |
|
|
| T |
13884452 |
actaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctttctcattaaattaaccatagcctcggtgtataatggc |
13884551 |
T |
|
| Q |
142 |
attgacattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatg |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13884552 |
attgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaatgttaatgtagctccatg |
13884631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 14024577 - 14024756
Alignment:
| Q |
42 |
actaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagccttagtatataatggc |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||| |
|
|
| T |
14024577 |
actaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctttctcattaaattaaccatagcctcggtgtataatggc |
14024676 |
T |
|
| Q |
142 |
attgacattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatg |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14024677 |
attgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaatgttaatgtagctccatg |
14024756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University