View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_87 (Length: 236)
Name: NF19009_low_87
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 37580602 - 37580451
Alignment:
| Q |
64 |
ggtttatttgattgaatttagtgtaggggatttaatttgtatatactcaatcagtgtataactgtcttttatatgtgtatcaaatcatatctcatcatgt |
163 |
Q |
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| T |
37580602 |
ggtttactcgattgaatttagtgtaggggatttaatttgtatatactcaatcagtgtaaaactgtcttttatatgtatatcaaatcatatctcatcgtgt |
37580503 |
T |
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| Q |
164 |
aa--atttgtagagatatttagcagcataatacagtggtcttaccttatgat |
213 |
Q |
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| T |
37580502 |
aaatatttgtagagatataaaggagcataataaagtggccttaccttatgat |
37580451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 34261850 - 34261917
Alignment:
| Q |
154 |
ctcatcatgtaaatttgtagagatatttagcagcataatacagtggtcttaccttatgataatgtatg |
221 |
Q |
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| T |
34261850 |
ctcatcatgtaaatttgtagagatatttaggagcataatacagtggtcttaccttatgataatgtatg |
34261917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 34261784 - 34261849
Alignment:
| Q |
64 |
ggtttatttgattgaatttagtgtaggggatttaatttgtatatactcaatcagtgtataactgtc |
129 |
Q |
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| T |
34261784 |
ggtttacttgattgaatttagtgtaggggatttaatttgtatatactcaatcagtgtataactgtc |
34261849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 27217151 - 27217025
Alignment:
| Q |
74 |
attgaatttagtgtaggggatttaatttgtatatactcaatcagtgtataactgtcttttatatgtgtatcaaatcatatctcatcatgtaa--atttgt |
171 |
Q |
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| T |
27217151 |
attgaatttagtgtaagg-atttaatttgtacatactcgatcagtgtaaaactgtatttacaatgtacattgaataatatctcatcatgtaaatatttgt |
27217053 |
T |
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| Q |
172 |
agagatatttagcagcataatacagtgg |
199 |
Q |
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| T |
27217052 |
ggagatatttaggaacataataaagtgg |
27217025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 27219799 - 27219690
Alignment:
| Q |
74 |
attgaatttagtgtaggggatttaatttgtatatactcaatcagtgtataactgtcttttatatgtgtatcaaatcatatctcatcatgtaa--atttgt |
171 |
Q |
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||||||||||||||| || |||||||||||| |||||||| ||||||| |||| | || |||||| || ||| |||||||||||||||| |||||| |
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| T |
27219799 |
attgaatttagtgtaagg-atttaatttgtacatactcaa-cagtgtaaaactctattaaatatgtacattgaataatatctcatcatgtaaatatttgt |
27219702 |
T |
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| Q |
172 |
agagatatttag |
183 |
Q |
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| T |
27219701 |
aaagatatttag |
27219690 |
T |
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