View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_low_9 (Length: 539)

Name: NF19009_low_9
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_low_9
NF19009_low_9
[»] chr8 (2 HSPs)
chr8 (36-523)||(36995453-36995946)
chr8 (43-521)||(37005404-37005886)
[»] chr4 (6 HSPs)
chr4 (36-401)||(13684404-13684773)
chr4 (36-394)||(22191591-22191953)
chr4 (36-138)||(26648384-26648486)
chr4 (220-306)||(26648531-26648617)
chr4 (427-521)||(13684272-13684366)
chr4 (458-520)||(26648784-26648846)
[»] chr7 (2 HSPs)
chr7 (61-386)||(8597983-8598315)
chr7 (425-521)||(8598506-8598602)


Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 36 - 523
Target Start/End: Original strand, 36995453 - 36995946
Alignment:
Q  36 gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 135  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995453 gctcagctcaatacttccttacaaggagaggtgggaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 36995552  T
Q  136 atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat 231  Q
    |||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995553 atgcctgttattggtcaatatacttagtaacaaggtaaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat 36995652  T
Q  232 accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc 331  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36995653 aacgacttaccccaacacctgaatctacaattctacttcaacattaccctcagcgtcaagaaaaccattttcacaggcacgctcaagatcaaatacatcc 36995752  T
Q  332 cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagc--nnnnnnnnnnnnnaaataataaaaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||    
T  36995753 cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagctttttttttttttttaaataataaaaa 36995852  T
Q  430 acctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36995853 acctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggattgttgtctat 36995946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 43 - 521
Target Start/End: Original strand, 37005404 - 37005886
Alignment:
Q  43 tcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg---- 138  Q
    |||| |||||||| |||||| ||| || || || ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||  |||        
T  37005404 tcgaaacttcctttcaaggaaaggcgggaaaactttttcactgtgcattaaaaacaatcacacaatgagttgcatgtaatgcagtgacacctgatgccta 37005503  T
Q  139 ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacataccgact 238  Q
    |||||| | |||||||||||||| | |||||||| | ||||||||| |||||||| || | |||||||| |||      ||||||||| |||||  ||||    
T  37005504 ttattgataaatatacttagtaatatggttaaaattctatgagtatgttgaccaataaaaatagaatgatatt------tctaatgcacacataatgact 37005597  T
Q  239 taccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggt 338  Q
    ||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||  | ||||  |||||||||| |||  ||    
T  37005598 tacccaatcacctgaatctgcaattctactttaacattaccctcagggtcaagaaaatctatttcacaggcagccgcaagcccaaatacatcgcccatgt 37005697  T
Q  339 gagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagcnnnnnnnnnnnnnaa-------ataataaaaaac 431  Q
     | | ||| |||| |||  ||||  ||||||||||||||||||||||| ||||||| ||||||  |             ||       |||| ||||||     
T  37005698 aatctttagaaacgaagctaaatgcatctgaataaactcaaatgaaatagttagtattagtaattcttttttaaaaaacaataactttataaaaaaaaa- 37005796  T
Q  432 ctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtct 521  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||   || ||||||||||||||| ||||| ||||||||    
T  37005797 ctaccaaaacaatcagtttgcccggggtcaagtgggtgaattatcgctaatttgcacagagcataaaagttcaaccttggattgttgtct 37005886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 36 - 401
Target Start/End: Complemental strand, 13684773 - 13684404
Alignment:
Q  36 gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 135  Q
    |||||| |||||||||| || |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13684773 gctcagttcgatacttctttacaaggagaggcgggaagaaattttctctgcgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 13684674  T
Q  136 atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat 231  Q
    |||    ||||||||||||||||| ||||| | ||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13684673 atgcttgttattggtcaatatactcagtaatacggtaaaaattctatgagtatattgaccaacaatagtagaatgagattgagatttctaatgcatacat 13684574  T
Q  232 accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc 331  Q
    | |||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||      
T  13684573 aacgacttacccaaacatctgaatctgcaattctacttgaacattaccctcagcgtgaagaaaacctttttcataggcacgctcaagatgaaatacatat 13684474  T
Q  332 cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaa 401  Q
    | |||| ||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  13684473 cgcgggcgagtcttacaaactgagtggaatcgatctgaataaactcaaatgaaatagttagtattagtaa 13684404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 394
Target Start/End: Original strand, 22191591 - 22191953
Alignment:
Q  36 gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 135  Q
    |||||| | ||||| || || ||| |||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  22191591 gctcagtttgatacctctttacaaagagaggcgggaagatattttctctgtgcattaacaacaatcatacaatgagttgcatggaattcagtgacaccga 22191690  T
Q  136 atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat 231  Q
    |||    ||||||||||||||||||||||| |  || |||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  22191691 atgcatgttattggtcaatatacttagtaatattgtaaaaattctatgagtatattgaccaacaacagtaaaatgagattgagatttcttatgcatacat 22191790  T
Q  232 accgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcc 331  Q
    | |||||||||| ||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||  ||| |    
T  22191791 aacgacttacccaaacatttgaatctgcaattctactttaacattatcctcagcgtcaagaaaacctttttcacaagcatgctcaagatgaaaatcatac 22191890  T
Q  332 cccgggtgagccttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagta 394  Q
    ||  |||||  |||||||||| |||| |||||||||||||||||||| ||||||| |||||||    
T  22191891 cctaggtgaatcttacaaactgagtggaatcgatctgaataaactcagatgaaatagttagta 22191953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 26648384 - 26648486
Alignment:
Q  36 gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca 135  Q
    ||||||||||||||||| || ||||||||||  | |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26648384 gctcagctcgatacttctttacaaggagaggctggaagaaattttctctgtgcattaataacgatcatacaatgagttgcatggaattcagtgacaccca 26648483  T
Q  136 atg 138  Q
    |||    
T  26648484 atg 26648486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 26648531 - 26648617
Alignment:
Q  220 taatgcatacataccgacttaccccaacacctgaatctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcaca 306  Q
    |||||||||||||  ||||||||| || | |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  26648531 taatgcatacataaggacttacccaaaaatctgaatctgcaattctactttaacattaccctcatcgtcaagaaaaccttcttcaca 26648617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 13684366 - 13684272
Alignment:
Q  427 aaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtct 521  Q
    ||||||||||  ||||||||||| ||| |  || | |||||||||||||||||| |||| | ||||||||||| |||||| ||||| ||||||||    
T  13684366 aaaacctacctgaacaatcagttagccggtagttacgggggtgaattatcgctactgtgctcagtgcataaaatttcaaccttggaatgttgtct 13684272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 26648784 - 26648846
Alignment:
Q  458 gtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtc 520  Q
    |||| |||||||||||||||||| |||||| ||| ||||||| ||||||| |||| |||||||    
T  26648784 gtcatgggggtgaattatcgctactgtgttcagtacataaaatttcaacactggattgttgtc 26648846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 61 - 386
Target Start/End: Original strand, 8597983 - 8598315
Alignment:
Q  61 gagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg----ttattggtcaatatactt 156  Q
    |||||| || |||||||||  |||||||||| | ||||||||||||||||||||||||||||||| || |||||| ||    ||||||||||||||||||    
T  8597983 gagaggcgggaagacatttagtctgtgcatttagaacaatcatacaatgagttgcatggaattcaatggcacccattgactgttattggtcaatatactt 8598082  T
Q  157 agtaacaaggttaaaaatttatgagtatatt---gaccaacaacagtagaatgagattgagatttctaatgcatacataccgacttaccccaacacctga 253  Q
    ||||| | ||| |||| | ||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||    
T  8598083 agtaatatggtaaaaattatatgagtatattattgaccaacaacagtagaatgagattgagatttctaatgcataaataacgacttacccaaacatctga 8598182  T
Q  254 atctgcaattctacttcaacattaccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaacta 353  Q
    | ||||||||||||||||| ||| |||| ||| ||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||     
T  8598183 aactgcaattctacttcaagattgcccttagcatcaagaaaaccattttcacaggcacgctcaaaatcatatacataccccgggtgagtcttacaaactg 8598282  T
Q  354 agtgaaatcgatctgaataaactcaaatgaaat 386  Q
    |||| ||||||||||| ||||||||||||||||    
T  8598283 agtggaatcgatctgattaaactcaaatgaaat 8598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 521
Target Start/End: Original strand, 8598506 - 8598602
Alignment:
Q  425 aaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtct 521  Q
    ||||||||||||||||||  ||||| || ||| || ||||| ||||||||||||||||||||| ||| ||||||| | |||| ||||| ||||||||    
T  8598506 aaaaaacctaccaaaacatacagttagctcggagtgaagggagtgaattatcgctaatgtgttcagtccataaaattccaaccttggaatgttgtct 8598602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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