View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_91 (Length: 230)
Name: NF19009_low_91
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_91 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 5903183 - 5902989
Alignment:
| Q |
21 |
ctgctattcttaagcttgctgacggtcttaacgttgctgcgaaatcggtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
120 |
Q |
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|||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903183 |
ctgccattcttaagcttgctgatggtcttaacattgctgtgaaatcggtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
5903084 |
T |
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| Q |
121 |
tcgaagcttttccgaggaagttgctgttcttgacagctattttggcaaactaggttctggtagtcaagcttacatgatgggtggtgctgataagt |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
5903083 |
tcgaagcttctccgaggaagttgctgttcttgacagctattttggcaaactaggttctggtagccaagcctacatgatgggtaatgctgataagt |
5902989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 5912020 - 5912214
Alignment:
| Q |
21 |
ctgctattcttaagcttgctgacggtcttaacgttgctgcgaaatcggtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
120 |
Q |
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|||| |||||||||||||| || || ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5912020 |
ctgcaattcttaagcttgccgattgtgttaacattgctgtgaaatcagtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
5912119 |
T |
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| Q |
121 |
tcgaagcttttccgaggaagttgctgttcttgacagctattttggcaaactaggttctggtagtcaagcttacatgatgggtggtgctgataagt |
215 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
5912120 |
tcgaagcttctctgaggaagttgctgttcttgacagctattttggcaaacttggttctggtagccaagcttacatgatgggtgatgctgataagt |
5912214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 5918654 - 5918848
Alignment:
| Q |
21 |
ctgctattcttaagcttgctgacggtcttaacgttgctgcgaaatcggtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
120 |
Q |
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|||| |||||||||||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
5918654 |
ctgcaattcttaagcttgccgatggtcttaacattactgtgaaatcggtgagatacactcgcggaagcttcatctttcctggagctcaatcattccctca |
5918753 |
T |
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| Q |
121 |
tcgaagcttttccgaggaagttgctgttcttgacagctattttggcaaactaggttctggtagtcaagcttacatgatgggtggtgctgataagt |
215 |
Q |
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||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |||||||| |
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| T |
5918754 |
tcgtagtttttccgaggaagttgctgtgcttgacagctattttggcaaactgggttctggtagccaagcttacatgatgggtaatggtgataagt |
5918848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 363316 - 363122
Alignment:
| Q |
21 |
ctgctattcttaagcttgctgacggtcttaacgttgctgcgaaatcggtgagatacactcgcggaagcttcattttccctggagctcaatcattccctca |
120 |
Q |
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|||| ||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
363316 |
ctgccattcttaagctggctgatggtcttaacattgctgtgaaatcagtgagatacactcgcggaagcttcatttttcctggagctcaatcattccctca |
363217 |
T |
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| Q |
121 |
tcgaagcttttccgaggaagttgctgttcttgacagctattttggcaaactaggttctggtagtcaagcttacatgatgggtggtgctgataagt |
215 |
Q |
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|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
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| T |
363216 |
ccgtagcttttctgaggaagttgttgttcttgacagctattttggcaaactaggttctggtagccaagcttatatgatgggtgatgctgataagt |
363122 |
T |
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