View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_99 (Length: 202)
Name: NF19009_low_99
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_99 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 21005656 - 21005470
Alignment:
| Q |
1 |
tagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttttgtaatctcactatt |
100 |
Q |
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| T |
21005656 |
tagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttttgtaatctcactatt |
21005557 |
T |
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| Q |
101 |
agtgtttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
187 |
Q |
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| T |
21005556 |
agtgtttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
21005470 |
T |
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Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 66861 - 66796
Alignment:
| Q |
122 |
catggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
187 |
Q |
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| T |
66861 |
catggggataacttcatcggaagaattcacattaaatacgatttataatttgttgtgttatctgtg |
66796 |
T |
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