View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_10 (Length: 382)
Name: NF1900_high_10
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 58 - 370
Target Start/End: Complemental strand, 39385745 - 39385440
Alignment:
| Q |
58 |
agaggcttgaatttgttattatggttcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaa |
157 |
Q |
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| T |
39385745 |
agaggcttgaatttgttattatggttcatatacaaagtagtta----gagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaa |
39385650 |
T |
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| Q |
158 |
taaccatttttaaaatgtaaatctttatacacctaaacatctttgtaaggaaattatatttcttttgaaattaaagaagggaaaccagctttatgtaata |
257 |
Q |
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| T |
39385649 |
taaccatttttaaaatgtaaatctttatacacctaaacatctttgtaaggaaattatatttcttttgaaattaaag---ggaaaccagctttatgtaata |
39385553 |
T |
|
| Q |
258 |
tttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctctagttttctacttgatgtgtttttgtaactg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385552 |
tttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctctagttttctacttgatgtgtttttgtaactg |
39385453 |
T |
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| Q |
358 |
agattgaagtgat |
370 |
Q |
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| T |
39385452 |
agtttgaagtgat |
39385440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 39165039 - 39165159
Alignment:
| Q |
82 |
ttcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaataaccatttttaaaatgtaaatct |
181 |
Q |
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| T |
39165039 |
ttcatatacaaaccagttatttggagtacatgtcacattttactaaagttttgaatgtataaaaggtttaactatataaccattttttagatgt-gatct |
39165137 |
T |
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| Q |
182 |
ttatacacctaaacatctttgt |
203 |
Q |
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| T |
39165138 |
ttatacacttgaacgtctttgt |
39165159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 39372909 - 39372972
Alignment:
| Q |
86 |
tatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctt |
149 |
Q |
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| T |
39372909 |
tatacaaactagttatttggagtacatgccacatgttactaaagtttagaatgtataaaagctt |
39372972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 39203771 - 39203686
Alignment:
| Q |
83 |
tcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaataaccattttt |
168 |
Q |
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| T |
39203771 |
tcatatacagactagttacttggagtacatgtcacattctactaaagttttgaatatataaaagatttaactatataaccattttt |
39203686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 39218066 - 39218146
Alignment:
| Q |
246 |
ctttatgtaatatttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctc |
326 |
Q |
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||||||||||||||| | |||| ||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
39218066 |
ctttatgtaatatttatcggaattatctctgttgactaagactgcttcatagatctgcagtctatgtggtttaaaattctc |
39218146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 39470662 - 39470634
Alignment:
| Q |
89 |
acaaactagttatttggagtacatgccac |
117 |
Q |
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| T |
39470662 |
acaaactagttatttggagtacatgccac |
39470634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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