View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1900_high_16 (Length: 305)
Name: NF1900_high_16
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_16 |
 | |
|
| [»] scaffold0779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 63 - 288
Target Start/End: Original strand, 25573370 - 25573595
Alignment:
| Q |
63 |
tattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25573370 |
tattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgtatgtacactcaatactaatgtgtactagctgtattacatca |
25573469 |
T |
|
| Q |
163 |
tagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25573470 |
tagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaacttgtggcacaagcaactgagatg |
25573569 |
T |
|
| Q |
263 |
cattgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25573570 |
cattgtgttcctgttgttgatcttcc |
25573595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 25578091 - 25578313
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25578091 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagttgtattacatcatag |
25578190 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25578191 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcat |
25578290 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25578291 |
tgtgttcctgttgttgatcttcc |
25578313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 66 - 288
Target Start/End: Complemental strand, 3856686 - 3856465
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3856686 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgctattgcatgtacactcaatactaatgtgtactagttgtattacatcatag |
3856587 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3856586 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag-gttttctgcaacttgtggcacaagcaactgagatgcat |
3856488 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3856487 |
tgtgttcctgttgttgatcttcc |
3856465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 23173471 - 23173693
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23173471 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
23173570 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23173571 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcat |
23173670 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23173671 |
tgtgttcctgttgttgatcttcc |
23173693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 26359016 - 26359238
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26359016 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
26359115 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26359116 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcat |
26359215 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26359216 |
tgtgttcctgttgttgatcttcc |
26359238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 18497352 - 18497574
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18497352 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactggctgtattacatcatag |
18497451 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18497452 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcat |
18497551 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18497552 |
tgtgttcctgttgttgatcttcc |
18497574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 26363722 - 26363944
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26363722 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagttgtattacatcatag |
26363821 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26363822 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcat |
26363921 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26363922 |
tgtgttcctgttgttgatcttcc |
26363944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 18503663 - 18503885
Alignment:
| Q |
66 |
tattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatag |
165 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18503663 |
tattatgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactggctgtattacatcatag |
18503762 |
T |
|
| Q |
166 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
18503763 |
ctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcagggttttctataacttgtggcacaagcaactgagatgcat |
18503862 |
T |
|
| Q |
266 |
tgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18503863 |
tgtgttcctgttgttgatcttcc |
18503885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 63 - 288
Target Start/End: Complemental strand, 1844 - 1619
Alignment:
| Q |
63 |
tattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1844 |
tattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgtacactcaatactaatgtgtactaggtgtattacatca |
1745 |
T |
|
| Q |
163 |
tagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1744 |
tagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttagtgttttctataacttgtggcacaagcaactgagatg |
1645 |
T |
|
| Q |
263 |
cattgtgttcctgttgttgatcttcc |
288 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1644 |
cattgtgttcctgttgttgatcttcc |
1619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University