View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_19 (Length: 279)
Name: NF1900_high_19
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 36775612 - 36775861
Alignment:
| Q |
20 |
ttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtg |
119 |
Q |
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| T |
36775612 |
ttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccaccgtgacaatggaagattgtttttgttcctagaagtagtg |
36775711 |
T |
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| Q |
120 |
tcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgagc |
219 |
Q |
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| T |
36775712 |
tcggttccatcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgagc |
36775811 |
T |
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| Q |
220 |
agcatggttcattgccaaggtcattgcctttgatcaatgttgttcctttg |
269 |
Q |
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| T |
36775812 |
aacatggttcattgccaaggtcattgcctttgatcaatgttgttcctttg |
36775861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 36788294 - 36788492
Alignment:
| Q |
23 |
tcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcg |
122 |
Q |
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| T |
36788294 |
tcctcctccacttccttcactctttagtcatagccaaccacttcaaatgatgccccgccgtgacaatggaaggttgtctttgttcctacaagttgtgtca |
36788393 |
T |
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| Q |
123 |
gttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttg---ctaatgaagaagagaaaattgttgatgactttgag |
218 |
Q |
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| T |
36788394 |
attccttcacctaataaattcttcgctaagcgacaaaatggtcgccttatcctcacgtttgctactaatgatgaagaagaaattgatgaggactttgag |
36788492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 36760295 - 36760493
Alignment:
| Q |
20 |
ttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtg |
119 |
Q |
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| T |
36760295 |
ttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaacgtgacaatggaaggctgtttttgttcctacaagttgtg |
36760394 |
T |
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| Q |
120 |
tcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgag |
218 |
Q |
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| T |
36760395 |
tcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgtttaataatgatgaagaagaaattgatgatgagtttgag |
36760493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 36796753 - 36796865
Alignment:
| Q |
81 |
cgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacat |
180 |
Q |
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| T |
36796753 |
cgtgacaatggaag---gtttttgttcctacaagttgtgcaggttccttcacacaactacttcttcgctaagcgacaaaatggtcgccttatcctcacgt |
36796849 |
T |
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| Q |
181 |
ttgctaatgaagaaga |
196 |
Q |
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| T |
36796850 |
ttaatgatgaagaaga |
36796865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 36797041 - 36797077
Alignment:
| Q |
222 |
catggttcattgccaaggtcattgcctttgatcaatg |
258 |
Q |
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| T |
36797041 |
catggttcattgccacggtcattgcctttgatcaatg |
36797077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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