View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1900_high_20 (Length: 267)
Name: NF1900_high_20
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_20 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13441503 - 13441237
Alignment:
| Q |
1 |
aataataagtatattatttacgtataaaaacgaaagtatggtcgaacttgaactcatgcactcacacacggggagatatagaaacgtgaatagtgagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13441503 |
aataataagtatattatttacgtataaaaacgaaagtatggtcgaacttgaactcatgcactcacacacggggagatatagaaacgtgaatagtgaatag |
13441404 |
T |
|
| Q |
101 |
aatataatagaataaatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13441403 |
aatataatagaataaatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccc |
13441304 |
T |
|
| Q |
201 |
tctttgtgacatagcaattatgtttgcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13441303 |
tctttgtgacatagcaactatgtttgcatcccgtggccaacaagtcacaatcatcaccactccctcc |
13441237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 13462563 - 13462421
Alignment:
| Q |
125 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtt |
224 |
Q |
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||||||||||||| ||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13462563 |
caatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaattatgtt |
13462464 |
T |
|
| Q |
225 |
tgcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||||||| |
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| T |
13462463 |
tgcatcccgtggccaacacgtcacagtcatcaccactccctcc |
13462421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 125 - 264
Target Start/End: Complemental strand, 13449542 - 13449403
Alignment:
| Q |
125 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtt |
224 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||| || |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
13449542 |
caatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtt |
13449443 |
T |
|
| Q |
225 |
tgcatcccgtggccaccaagtcacaatcatcaccactccc |
264 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
13449442 |
tgcatcccgtggccagcaagtaacagtcatcaccactccc |
13449403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 12541851 - 12541710
Alignment:
| Q |
126 |
aatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgttt |
225 |
Q |
| |
|
|||||||||||||||||| || |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
12541851 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
12541752 |
T |
|
| Q |
226 |
gcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
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||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
12541751 |
gcatcacatggccaacaagtcacaatcatcaccactccctcc |
12541710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 28386499 - 28386365
Alignment:
| Q |
133 |
ggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtttgcatccc |
232 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||||||||||||| |||| |||||||||||||||||| || |||||||| ||||||| | |||||||||| | |
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| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcac |
28386400 |
T |
|
| Q |
233 |
gtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |
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| T |
28386399 |
gtggccaacatgtcacaatcatcaccactccctcc |
28386365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 3416536 - 3416678
Alignment:
| Q |
125 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtt |
224 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||| ||| |||||| |||||| |
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| T |
3416536 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagctatgtt |
3416635 |
T |
|
| Q |
225 |
tgcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
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|||||||| |||||| || |||||||||||||||||||||||| |
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| T |
3416636 |
tgcatcccatggccaacatgtcacaatcatcaccactccctcc |
3416678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 266
Target Start/End: Complemental strand, 48966508 - 48966367
Alignment:
| Q |
125 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtt |
224 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||| ||| || |
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|
| T |
48966508 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctt |
48966409 |
T |
|
| Q |
225 |
tgcatcccgtggccaccaagtcacaatcatcaccactccctc |
266 |
Q |
| |
|
|||||| | |||||| |||||||| |||||||| |||||||| |
|
|
| T |
48966408 |
tgcatctcatggccaacaagtcaccatcatcacaactccctc |
48966367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 48959330 - 48959178
Alignment:
| Q |
115 |
aatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatag |
214 |
Q |
| |
|
||||||| | ||||||||||||||||||| || |||| ||||| |||||||||||||||||| |||| |||| ||||||||||| | |||||||||| |
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|
| T |
48959330 |
aatttataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatag |
48959231 |
T |
|
| Q |
215 |
caattatgtttgcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
|
||| | |||||||||||| |||||| ||||| ||||||||||||||||||||| |
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|
| T |
48959230 |
caactctgtttgcatcccatggccaacaagtgacaatcatcaccactccctcc |
48959178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 48963461 - 48963320
Alignment:
| Q |
126 |
aatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgttt |
225 |
Q |
| |
|
|||||| || |||||||| ||||||||| ||||| ||||||||||||||||||| ||| |||| |||||||| ||| | ||||||||||| | ||||| |
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|
| T |
48963461 |
aatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgttt |
48963362 |
T |
|
| Q |
226 |
gcatcccgtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48963361 |
gcgtcccgtggccaacaagtcacaatcatcaccactccctcc |
48963320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 12482442 - 12482599
Alignment:
| Q |
106 |
aatagaataaatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctcttt |
205 |
Q |
| |
|
|||||| | |||| ||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||| || |||| |||| |||||||||||| | | |
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|
| T |
12482442 |
aatagagtgaattgatctacaatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgt |
12482541 |
T |
|
| Q |
206 |
gtgacatagcaattatgtttgcatcccgtggccaccaagtcacaatcatcaccactcc |
263 |
Q |
| |
|
| | || |||| | |||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
12482542 |
gcaagattgcaactctgtttgcatcacgtggccatcatgtcacaatcatcaccactcc |
12482599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 12589193 - 12589333
Alignment:
| Q |
125 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtt |
224 |
Q |
| |
|
||||| |||| |||||| | |||| |||| | ||| |||||||||||||||||||| || |||| |||||||||||||| |||||||| |||| |||| |
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|
| T |
12589193 |
caatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtt |
12589292 |
T |
|
| Q |
225 |
tgcatcccgtggccaccaagtcacaatcatcaccactccct |
265 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
12589293 |
tgcatcccgtggccaacaagtcacaatcaccaccactccct |
12589333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 12640495 - 12640629
Alignment:
| Q |
133 |
ggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaattatgtttgcatccc |
232 |
Q |
| |
|
||||||| ||| ||||| ||| ||||| ||| | | |||||| ||||||| |||| |||||||| ||| | ||||||||||| | |||||||||||| |
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|
| T |
12640495 |
ggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatccc |
12640594 |
T |
|
| Q |
233 |
gtggccaccaagtcacaatcatcaccactccctcc |
267 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| |
|
|
| T |
12640595 |
atggccaacaagtcacgatcatcaccactccctcc |
12640629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 523 - 585
Alignment:
| Q |
150 |
accactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacat |
212 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| | || || |||||||||||||||||||| |
|
|
| T |
523 |
accactcaaactttacttcattccatatctagcagcaggtcacatgatccctctttgtgacat |
585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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