View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_22 (Length: 256)
Name: NF1900_high_22
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_22 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 13440987 - 13441236
Alignment:
| Q |
7 |
cattagcccatgggtatgcggagtcagagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtg |
106 |
Q |
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| T |
13440987 |
cattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtg |
13441086 |
T |
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| Q |
107 |
gatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaatcgg |
206 |
Q |
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| T |
13441087 |
gatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcgg |
13441186 |
T |
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| Q |
207 |
aggaagaaggaagccgcggatgagagagatttggttagggattgagcgtt |
256 |
Q |
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| T |
13441187 |
aggaagaaggaagccgcggatgagagagatttggttagggattgagcgtt |
13441236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 13462224 - 13462414
Alignment:
| Q |
60 |
tccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgcctt |
159 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| || | ||||| |||||||||||||||||||||||||| | |
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| T |
13462224 |
tccatgaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccat |
13462323 |
T |
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| Q |
160 |
cagggaggtcgacttgttgggagggaaagtcgacggtgtggaatcggaggaagaaggaagccgcggatgagagagatttggttagggattg |
250 |
Q |
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| T |
13462324 |
caggaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattg |
13462414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 13449150 - 13449392
Alignment:
| Q |
7 |
cattagcccatgggtatgcggagtcagagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtg |
106 |
Q |
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| T |
13449150 |
cattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtatg |
13449249 |
T |
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| Q |
107 |
gatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaatcgg |
206 |
Q |
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| T |
13449250 |
gatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaagacga |
13449349 |
T |
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| Q |
207 |
aggaa-gaaggaagccgcggatgagagagatttggttagggatt |
249 |
Q |
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||||| ||||| ||| ||||||||||||||||||| ||||||| |
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| T |
13449350 |
aggaatgaagg-agcgtcggatgagagagatttggtaagggatt |
13449392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 13455621 - 13455669
Alignment:
| Q |
7 |
cattagcccatgggtatgcggagtcagagatgatacaatctggtggatc |
55 |
Q |
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| T |
13455621 |
cattaacccatgggtatgcagcgtcggagatgatacaatctgggggatc |
13455669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 3416928 - 3416719
Alignment:
| Q |
7 |
cattagcccatgggtatgcggagtcagagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtg |
106 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||||||||||| || | |||||||||||||||| || ||||||||||||||||||| || |
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| T |
3416928 |
cattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgtt |
3416829 |
T |
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| Q |
107 |
gatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaatcgg |
206 |
Q |
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||||||||||| ||| | ||| |||||||| || |||||||||||||||||||||||||| | |||||| ||||||||||||||||||| | ||| |
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| T |
3416828 |
gatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaagggaaagtcgacggtgtgaaggcgg |
3416729 |
T |
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| Q |
207 |
aggaagaagg |
216 |
Q |
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|||||||||| |
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| T |
3416728 |
aggaagaagg |
3416719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 12541501 - 12541664
Alignment:
| Q |
36 |
atgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtgg |
135 |
Q |
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||||||||||| ||||||| ||| | | ||||| ||||||| |||||||||||||||||| ||| ||| || ||||||||||| || | |||||||| |
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| T |
12541501 |
atgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcaccattgtgaattttccaagaggtaatggggtcagtgg |
12541600 |
T |
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| Q |
136 |
tggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtg |
199 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||| |
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| T |
12541601 |
tggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtg |
12541664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 28386124 - 28386316
Alignment:
| Q |
7 |
cattagcccatgggtatgcggagtcagagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtg |
106 |
Q |
| |
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|||||||||||| | |||||||||||| || |||||||| ||||||| ||||| | ||||||| ||| | | ||| |||||||||||||||| || |
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| T |
28386124 |
cattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgcttcattgaggagcattgcgccattatg |
28386223 |
T |
|
| Q |
107 |
gatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtg |
199 |
Q |
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||||||||||| ||| |||| |||||||||||| | |||||| |||| ||||| |||||||||||||||||| |||| || || |||||||| |
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| T |
28386224 |
gatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtg |
28386316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 48959055 - 48959110
Alignment:
| Q |
134 |
ggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagt |
189 |
Q |
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|||||| ||||||||||||| ||| ||||||||| | ||||||||||||||||||| |
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| T |
48959055 |
ggtggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagt |
48959110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 48963097 - 48963162
Alignment:
| Q |
35 |
gatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgcc |
100 |
Q |
| |
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|||||| || || |||||||| |||||||||||||||| ||| | ||| ||||||||||||||||| |
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| T |
48963097 |
gatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgcc |
48963162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 48966145 - 48966206
Alignment:
| Q |
36 |
atgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgc |
97 |
Q |
| |
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|||||||| || |||||||||||||||||||||| || ||| | | | |||||||||||||| |
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| T |
48966145 |
atgatacagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgc |
48966206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 12640755 - 12640687
Alignment:
| Q |
131 |
agtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtg |
199 |
Q |
| |
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||||||||| |||| ||||||| ||| || || || ||||||||||||||||| |||||||||||||| |
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| T |
12640755 |
agtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtg |
12640687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 12482732 - 12482661
Alignment:
| Q |
128 |
gtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtg |
199 |
Q |
| |
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||||| |||||| |||| |||||| ||||| | || |||| |||||| |||| ||||||||||||||||||| |
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| T |
12482732 |
gtcagcggtggaggacaaagattctatgccgttagcgaggccgacttcttggaagggaaagtcgacggtgtg |
12482661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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