View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_25 (Length: 247)
Name: NF1900_high_25
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 14550519 - 14550756
Alignment:
| Q |
10 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
109 |
Q |
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| T |
14550519 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
14550618 |
T |
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| Q |
110 |
ataatgcagtttggtagcattatatatttaactaatgggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
209 |
Q |
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| T |
14550619 |
ataatgcagtttggtagcattatatatttaactaataggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
14550718 |
T |
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| Q |
210 |
cgtgtagaacgggtgatatacaagattattaaaacttt |
247 |
Q |
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| T |
14550719 |
cgtgtagaacgggtgatatacaagattattaaaacttt |
14550756 |
T |
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