View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_28 (Length: 245)
Name: NF1900_high_28
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 29672327 - 29672551
Alignment:
| Q |
21 |
attgaaataaaccaaaccagcgttagcaacacccattcagtgggtcccatcaacaagcccacagaggctacgagcatagtaaagtgctaaacgtgctatg |
120 |
Q |
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| T |
29672327 |
attgaaataaaccaaaccagcgttagcaacacccattccgtgggtcccatcaacaagcccacagaggctacgagcatagtaaagtgctaaacgtgctatg |
29672426 |
T |
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| Q |
121 |
cctgaatgaccatgaagttcacctatggcttttggaaaaacgggccgacccagggctttttcttgggccaaacggtgggtttcggtgaagcggcaagagt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672427 |
cctgaatgaccatgaagttcacctatggcttttggaaaaacgggccggcccagggctttttcttgggccaaacggtgggtttcggtgaagcggcaagagt |
29672526 |
T |
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| Q |
221 |
aactgacggagccgtttgtgaattt |
245 |
Q |
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|||| |||||||||||||||||||| |
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| T |
29672527 |
aacttacggagccgtttgtgaattt |
29672551 |
T |
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