View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_29 (Length: 241)
Name: NF1900_high_29
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_29 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10863169 - 10863388
Alignment:
| Q |
22 |
tgtacttataagtgttgtacaaatatgcctcatagctctttgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgt |
121 |
Q |
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| T |
10863169 |
tgtacttataagtgttgtacaaatatacctcatagctctatgcagatatcattcatccatcacagttgataagcttaaagtatctggaattatttacctt |
10863268 |
T |
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| Q |
122 |
gaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaagttaatatactggtgacattaaatacctta |
221 |
Q |
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| T |
10863269 |
gaatatgaatgacagaggagaagttttgtatattgttagtgtactcaaaagtgcttctaacctggtggaacttactatacaggtgaccataaatacctta |
10863368 |
T |
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| Q |
222 |
ttctttctttgcttctcttt |
241 |
Q |
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||||||| | |||| ||||| |
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| T |
10863369 |
ttctttcctggcttgtcttt |
10863388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 10902452 - 10902660
Alignment:
| Q |
22 |
tgtacttataagtgttgtacaaatatgcctcatagctctttgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgt |
121 |
Q |
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| T |
10902452 |
tgtacttataagtgctgtacaaatatgcctcataggtctatgcagatatcattcatccatcatagttgataagcgtaaagtatctgaaattaaaagcctt |
10902551 |
T |
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| Q |
122 |
gaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaagttaatatactggtgacattaaatacctta |
221 |
Q |
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| T |
10902552 |
gaatatggatgacagaggagaagttttggatattgttagtgtactcaaaagtgcttctaacctggtggaacttgatatacaggtgacaataaatacctta |
10902651 |
T |
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| Q |
222 |
ttctttctt |
230 |
Q |
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| T |
10902652 |
ttctttctt |
10902660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 40010389 - 40010264
Alignment:
| Q |
62 |
tgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttagt |
161 |
Q |
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| T |
40010389 |
tgcagatatcattcatccatcacagctgataagcttaaagtatctgaaattaaatatcgtgaatttggatcgaagagaagaacttttgcatattgttagt |
40010290 |
T |
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| Q |
162 |
gtacttaaaagtgcttctaacttggt |
187 |
Q |
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| T |
40010289 |
gtactcaaaagtgcttctaacctggt |
40010264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 16866244 - 16866373
Alignment:
| Q |
62 |
tgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttagt |
161 |
Q |
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||||||||||||||||||||||||| ||||| |||| |||||||| | ||| ||||||| ||||||| |||| |||| ||||||||||||||||| |
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| T |
16866244 |
tgcagatatcattcatccatcacagctgataggcttgaagtatctgaaattagatcgcgtgaatttggatgaaagagaagaacttttgtatattgttagt |
16866343 |
T |
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| Q |
162 |
gtacttaaaagtgcttctaacttggtggaa |
191 |
Q |
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| T |
16866344 |
gtactcaaaagtgcttctaacctggtggaa |
16866373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 2555 - 2435
Alignment:
| Q |
62 |
tgcagatatcattcatccatcacagttgataagcttaaagtatct-aagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttag |
160 |
Q |
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|||||||||||||| ||| ||||||||||| |||||||||||||| || || ||| | |||||| ||||||| ||||||||| | | ||||||||||| |
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| T |
2555 |
tgcagatatcattcctccgtcacagttgattagcttaaagtatctgaaattgaat-tcggtgaatttggatgaaagaggagaactatattatattgttag |
2457 |
T |
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| Q |
161 |
tgtacttaaaagtgcttctaac |
182 |
Q |
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|||||| ||||||||||||||| |
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| T |
2456 |
tgtactcaaaagtgcttctaac |
2435 |
T |
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