View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_33 (Length: 235)
Name: NF1900_high_33
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 718558 - 718778
Alignment:
| Q |
1 |
cttgttgcatcaactaataactaggcacatatattctgaaaata-tttattcaaaatagcatatccttattgaacatgtagaaacacatactccatctgt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718558 |
cttgttgcatcaactaataactaggcacatatattctgaaaatagtttattcaaaatagcatatccttattgaacatgtagaaacacatactccatctgt |
718657 |
T |
|
| Q |
100 |
ctcatatatatataaacnnnnnnntattcaatatgaagatttaaaataataaacacaagaaagttttaattaattctattaatttaatgatattgtgttt |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718658 |
ctcatatatatataaacaaaaaaatattcaatatgaagatttaaaataataaacacaagaaagttttaattaattctattaatttaatgatattgtgttt |
718757 |
T |
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| Q |
200 |
gaaaaactctttagttaattt |
220 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
718758 |
gaaaaactctttagttaattt |
718778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 775161 - 774939
Alignment:
| Q |
1 |
cttgttgcatcaactaataactaggcacatatattctgaaaata-tttattcaaaatagcatatccttattgaacatgtagaaacacatactccatctgt |
99 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
775161 |
cttgttgcgtcaactaataactaggcacatatattctgaaaatagtttattcaaaatagcatatccttattgaacatgtagaaacacatactccatctgt |
775062 |
T |
|
| Q |
100 |
ctcatatatatata--aacnnnnnnntattcaatatgaagatttaaaataataaacacaagaaagttttaattaattctattaatttaatgatattgtgt |
197 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
775061 |
ctcatatatatatataaacaaaaaaatattcaatatgaagatttaaaataataaacacaagaaagttttaattaattctattaatttaatgatattgtgt |
774962 |
T |
|
| Q |
198 |
ttgaaaaactctttagttaattt |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
774961 |
ttgaaaaactctttagttaattt |
774939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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