View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_5 (Length: 509)
Name: NF1900_high_5
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Complemental strand, 37749302 - 37748817
Alignment:
| Q |
13 |
aggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagtggacatctag |
112 |
Q |
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| T |
37749302 |
aggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagtggacatctag |
37749203 |
T |
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| Q |
113 |
atgctaattttggtcataatatcacatcactagcaattctgtatgatgatactctaactatagctcaattttttattacttcatcctttccaattctgta |
212 |
Q |
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| T |
37749202 |
atgctaattttggtcataatatcacatcactagcaattctgtatgatgatactctaactatagctcaattttttattacttcatcctttccaattctgta |
37749103 |
T |
|
| Q |
213 |
tgatgatactgagtttcttcttgttacagtttgcttgacaacaatgaactccttattggtttctcccccaaaatcaatgaactgaagatgctttcggagt |
312 |
Q |
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| T |
37749102 |
tgatgatactgagtttcttcttgttacagtttgcttgacaacaatgaactccttattggtttctcccccaaaatcaatgaactgaagatgctttcggagt |
37749003 |
T |
|
| Q |
313 |
atcaagtagataaaaatcagttaatcaatgcagataagatgtcatcttgttctgaaagatccatcacatggtatgttactaataaactgtaaggtttttc |
412 |
Q |
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| T |
37749002 |
atcaagtagataaaaatcagttaatcaatgcagataagatgtcatcttgttctgaaagatccatcacatggtatgttactaataaactgtaaggtttttc |
37748903 |
T |
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| Q |
413 |
acatttttatcatacgc-ttttttcctatagtctaagttgtgtccattttatgcctattataaggcatgttcatgaaaatgaaggt |
497 |
Q |
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| T |
37748902 |
acatttttatcatgcactttttttcctatagtctaagttgtgtccattttatgcctattataaggcatgttcatgaaaatgaaggt |
37748817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 43006708 - 43006830
Alignment:
| Q |
13 |
aggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagtggacatctag |
112 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||||| ||| ||| |||| ||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
43006708 |
aggaacaactctttctatggtaccatacttgaagaagttgtaggcttaaaagaatttgagattttggatttgggttacaacaactttagtggacatctag |
43006807 |
T |
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| Q |
113 |
atgctaattttggtcataatatc |
135 |
Q |
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| T |
43006808 |
atgctaattttgagcataatatc |
43006830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 35608773 - 35608849
Alignment:
| Q |
318 |
gtagataaaaatcagttaatcaatgcagataa--gatgtcatcttgttctgaaagatccatcacatggtatgttact |
392 |
Q |
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|||||| |||| ||||||||||||||| ||| |||| ||||||||| |||||||||||||||| |||||||||| |
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| T |
35608773 |
gtagatgaaaaccagttaatcaatgcaactaattgatgcaatcttgttcagaaagatccatcacattgtatgttact |
35608849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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