View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_high_9 (Length: 399)
Name: NF1900_high_9
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 74 - 383
Target Start/End: Complemental strand, 2938505 - 2938196
Alignment:
| Q |
74 |
acaaaattgtaaatgataccaaactatatgctgnnnnnnncatcgaaactacaaacttataaagcaaacccaacatggaagaaaatgttacctgagtatt |
173 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2938505 |
acaaaattgtaaatgataccaaactatatgctgtttttttcatcgaaactacaaacttataaagcaaacccaacatggaagaaaatgttacctgagtatt |
2938406 |
T |
|
| Q |
174 |
ctcgatgatatgaccatcttcatctcgtagtctgcaacacgagtaccagaaacacaattaccagaaactaaactattttctcagactctagttgataaga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2938405 |
ctcgatgatatgaccatcttcatctcgtagtctgcaacacgagtaccagaaacacaattaccagaaactaaactattttctcagactctagttgataaga |
2938306 |
T |
|
| Q |
274 |
aaactgtaacaaaacacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgtgtctgaacataaaactcttcaggct |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2938305 |
aaactgtaacaaaacacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgcgtctgaacataaaactcttcaggct |
2938206 |
T |
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| Q |
374 |
tataaggaac |
383 |
Q |
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|||||||||| |
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| T |
2938205 |
tataaggaac |
2938196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 2939056 - 2939017
Alignment:
| Q |
11 |
cagagatattttaaacaatagtcagaagcggaaggtgaaa |
50 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
2939056 |
cagagagattttaaacaatagtcagaagcggaaggtgaaa |
2939017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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