View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_11 (Length: 446)
Name: NF1900_low_11
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Original strand, 10760108 - 10760526
Alignment:
| Q |
9 |
gtgagatgaagcaacccaaagaacattactattacatttttcttctcgttttgggtttctctcatgaaagatcatagaaaacatagcagagccatttcat |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10760108 |
gtgacatgaagcaacccaaagaacattactattacatttttcttctcgttttgggtttctctcatgaaagatcatagaaaacatagcagagccatttcat |
10760207 |
T |
|
| Q |
109 |
ggagcacattcttctggttcactattgtggttgtcttatcttccattatctttacctccctaattatttcatccatccaccccttctacctccctcgatt |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10760208 |
ggagcacattcttttggttcactattgtggttgtcttatcttccattatctttacctccctaattatttcatccatccaccccttctacctccctcgatt |
10760307 |
T |
|
| Q |
209 |
tcacatcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttatgcttcctgatcatgttttaatgttctta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
10760308 |
tcacatcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttttgcttcctgatcatgttttaattttctta |
10760407 |
T |
|
| Q |
309 |
aactaccctttatcttttcgctatcacaccaaacatgaccttcaatgtgtttactcttcagatgatgactcaaaacctcgtctcactcaagaaccggttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10760408 |
aactaccctttatcttttcgctatcacaccaaacgtgaccttcaatgtgtttactcttcagatcatgactcaaaacctcgtctcactcaagaaccggttc |
10760507 |
T |
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| Q |
409 |
aactttactcgattaggct |
427 |
Q |
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||||||||||||||||||| |
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| T |
10760508 |
aactttactcgattaggct |
10760526 |
T |
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