View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_13 (Length: 385)
Name: NF1900_low_13
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 17728163 - 17727819
Alignment:
| Q |
15 |
atcatctccataatgcactttgcagtgattttttgctgccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgtcgcagtacaga |
114 |
Q |
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| T |
17728163 |
atcatctccataatgcactttgcagtgattttttgctgccatgtgtttcctgattgcttccaagctgctgaaaggatgacaccgatcgtcgcagtacaga |
17728064 |
T |
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| Q |
115 |
cacaagtagtctcttttgacctacaaattggaaagatattattattttttcagaccaaacaaaacataatcnnnnnnngggagagggtcacagaattata |
214 |
Q |
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| T |
17728063 |
cacaagtagtctcttttgacctacaaattggaaagatattattattttttcagaccaaacaaaacataatctttttttgggaaagggtcacagaattata |
17727964 |
T |
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| Q |
215 |
ccttcagtccaagataagtgaggagtccttttggatctttcaaatactcaacatctggaatgaagaatccatgatgcttgtgcatatgaaccatgcagtt |
314 |
Q |
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| T |
17727963 |
ccttcagtccaagataagtgaggagtccttttggatctttcaaatactcaacatctggaatgaaaaatccatgatgcttgtgcatatgaaccatgcagtt |
17727864 |
T |
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| Q |
315 |
ttctattgttttatgcttatgat-cacacataaaacaacacgatg |
358 |
Q |
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| T |
17727863 |
ttctattgttttgtgcttatcttggacacataaaacaacacgatg |
17727819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 1511410 - 1511067
Alignment:
| Q |
15 |
atcatctccataatgcactttgcagtgattttttgctgccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgtcgcagtacaga |
114 |
Q |
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| T |
1511410 |
atcatcaccataatgcaccttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacactgatcgttgcagtacaga |
1511311 |
T |
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| Q |
115 |
cacaagtagtctcttttgacctacaaattggaaagatattattattttttcagaccaaacaaaacataatcnnnnnnngggagagggtcacagaattata |
214 |
Q |
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| T |
1511310 |
cacaagtagtctcttttgacctacaaattggaaagatattagtattttttcagaccaaaccaaacatattctttttttgggagagggtcgcagaattata |
1511211 |
T |
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| Q |
215 |
ccttcagtccaagataagtgaggagtccttttggatctttcaaatactcaacatctggaatgaagaatccatgatgcttgtgcatatgaaccatgcagtt |
314 |
Q |
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| T |
1511210 |
ccttcagcccaagataagtgaggagtccttttggatctttcaaatactcaacatctggaatgaagaatccatgatgcttgtgcatatgaaccatgcagtt |
1511111 |
T |
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| Q |
315 |
ttctattgttttatgcttatgatcacacataaaacaacacgatg |
358 |
Q |
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| T |
1511110 |
ttctattgttttgtgcttatgatcacacataaaacaacacgatg |
1511067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 25462784 - 25462567
Alignment:
| Q |
34 |
ttgcagtgattttttgctgccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgtcgcagtacagacacaagtagtctcttttga |
133 |
Q |
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| T |
25462784 |
ttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacactgatcgttgcagtacagacacaagtagtctcttttga |
25462685 |
T |
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| Q |
134 |
cctacaaattggaaagatattattattttttcagaccaaacaaaacataatcnnnnnnngggagagggtcacagaattataccttcagtccaagataagt |
233 |
Q |
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| T |
25462684 |
cctacaaattggaaaggtattagtattttttccgaccaaaccaaacatattctttttttgggagagggtcgcagaattataccttcagcccaagatatgt |
25462585 |
T |
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| Q |
234 |
gaggagtccttttggatc |
251 |
Q |
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| T |
25462584 |
gaggagtccttttggatc |
25462567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 25462566 - 25462489
Alignment:
| Q |
281 |
atccatgatgcttgtgcatatgaaccatgcagttttctattgttttatgcttatgatcacacataaaacaacacgatg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25462566 |
atccatgatgcttgtgcatatgaaccatgcagttttctattgttttgtgcttatgatcacacataaaacaacacgatg |
25462489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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