View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_15 (Length: 376)
Name: NF1900_low_15
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 4241309 - 4240960
Alignment:
| Q |
16 |
caattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaa |
115 |
Q |
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| T |
4241309 |
caattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccttagccaaaatatgtcgaa |
4241210 |
T |
|
| Q |
116 |
aaaagtgagagagattgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaattttaatgttgctgttgctagccatgtgaaacaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4241209 |
aaaagtgagagagattgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaattttaatgttgctgctgctagccatgtgaaacaaa |
4241110 |
T |
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| Q |
216 |
ggaagtgatgatattttagctatcaaagatacatgggttagaaactagcaagcacacaagcaaggttttgttaactttttaatttactctctaaagtaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241109 |
ggaagtgatgatattttagctatcaaagatacatgggttagaaactagcaagcacacaagcaaggttttgttaactttttaatttactctctaaagtaat |
4241010 |
T |
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| Q |
316 |
acctatgtcgtccttaactatacatttgtagccacttaatataatatttt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241009 |
acctatgtcgtccttaactatacatttgtagccacttaatataatatttt |
4240960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 4250549 - 4250368
Alignment:
| Q |
16 |
caattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaa |
115 |
Q |
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| T |
4250549 |
caatcgtttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaaccttagccaaaatatgtcgaa |
4250450 |
T |
|
| Q |
116 |
aaaagtgagagagattgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaattttaatgttgctgttg |
197 |
Q |
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| T |
4250449 |
gaaagtaagagggattgaggtggtttttgttgatgatggaggaacaaccttgaagtgatcgtgaactttaatgttgctgttg |
4250368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 4188877 - 4188715
Alignment:
| Q |
22 |
tttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagt |
121 |
Q |
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||||||||||||| |||| || |||||||||||||||||||||||| || ||||| |||||| ||||||||| | | ||||||||||||||| ||||| |
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| T |
4188877 |
tttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagt |
4188778 |
T |
|
| Q |
122 |
gagagagattgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaatttt |
184 |
Q |
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| T |
4188777 |
gaaaggaattgttgtagtttgggttgatgatgaaggaacaactttgaagtgttcatggatttt |
4188715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 4195758 - 4195595
Alignment:
| Q |
30 |
aagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagaga |
129 |
Q |
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||||| ||||||| ||| ||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| || |||| |||| | |
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| T |
4195758 |
aagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagagggg |
4195659 |
T |
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| Q |
130 |
ttgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaattttaatgttgct |
193 |
Q |
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| T |
4195658 |
ttgttgttttttgggttgatgatggaggagtaactttaatgtgttcatggattttaatgttgct |
4195595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 4233510 - 4233340
Alignment:
| Q |
27 |
aagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagag |
126 |
Q |
| |
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|||||||| |||| || ||| |||||||||||||||| |||||| || | ||||| |||||||||||| |||||||||||||| || |||| |||| |
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| T |
4233510 |
aagaagaaagaagggtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaaccttagccaaaatatgtcaaagtaagtaagag |
4233411 |
T |
|
| Q |
127 |
agattgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaattttaatgttgctgttg |
197 |
Q |
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| T |
4233410 |
gggttgttgttttttgagttgatgatggaggaaaaactttggtgtgttcatggattttaacgttgttgttg |
4233340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 4192017 - 4191854
Alignment:
| Q |
22 |
tttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagt |
121 |
Q |
| |
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|||| |||||||| |||| || |||||||||| |||||||||||||||| || | ||| | ||||| | | | ||||| ||||||||||| ||||| |
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| T |
4192017 |
tttggaagaagaaagaagggtgtgattgtgaacttgggagggtgtagaagaaaacacgttccactggatatacctttagccataatatgtcgaagaaagt |
4191918 |
T |
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| Q |
122 |
gagagagattgaggttgtttggtttgatgat-ggaggaacaactttgatgtgttcgtgaatttt |
184 |
Q |
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||||| || || || ||||| |||||||| ||||||||||| ||||||||||| ||| |||| |
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| T |
4191917 |
gagagggaatgttgtcgtttgtgttgatgattggaggaacaacattgatgtgttcatgagtttt |
4191854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 4121935 - 4121860
Alignment:
| Q |
30 |
aagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaa |
105 |
Q |
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||||| |||| || ||||||||||||||||||||||||||| ||||| ||| | |||||| ||||| ||||||| |
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| T |
4121935 |
aagaaagaagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaaccttagccaaa |
4121860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 4101077 - 4101028
Alignment:
| Q |
44 |
tgattgtgaatttgggagggtgtagaataagatgtattctattggatgga |
93 |
Q |
| |
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||||||||| |||||||||||||| || |||||| |||||| |||||||| |
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| T |
4101077 |
tgattgtgattttgggagggtgtacaaaaagatgcattctactggatgga |
4101028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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